6V8I image
Deposition Date 2019-12-11
Release Date 2020-03-04
Last Version Date 2024-03-06
Entry Detail
PDB ID:
6V8I
Keywords:
Title:
Composite atomic model of the Staphylococcus aureus phage 80alpha baseplate
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Distal Tail Protein, gp58
Chain IDs:A (auth: AC), B (auth: AD), E (auth: CC), F (auth: CD), I (auth: BC), J (auth: BD)
Chain Length:315
Number of Molecules:6
Biological Source:Staphylococcus virus 80alpha
Polymer Type:polypeptide(L)
Molecule:Tail-Associated Lysin, gp59
Chain IDs:C (auth: AE), G (auth: CE), K (auth: BE)
Chain Length:633
Number of Molecules:3
Biological Source:Staphylococcus virus 80alpha
Polymer Type:polypeptide(L)
Molecule:Receptor Binding Protein, gp61
Chain IDs:CB (auth: BH), DB (auth: BG), EB (auth: BI), FB (auth: DH), GB (auth: DG), HB (auth: DI), IB (auth: AH), JB (auth: AG), KB (auth: AI), LB (auth: FH), MB (auth: FG), NB (auth: FI), OB (auth: CH), PB (auth: CG), QB (auth: CI), RB (auth: EH), SB (auth: EG), TB (auth: EI)
Chain Length:636
Number of Molecules:18
Biological Source:Staphylococcus virus 80alpha
Polymer Type:polypeptide(L)
Molecule:Fiber Lower, gp62
Chain IDs:M (auth: BJ), N (auth: BK), O (auth: BL), P (auth: DJ), Q (auth: DK), R (auth: DL), S (auth: AJ), T (auth: AK), U (auth: AL), V (auth: FJ), W (auth: FK), X (auth: FL), Y (auth: CJ), Z (auth: CK), AA (auth: CL), BA (auth: EJ), CA (auth: EK), DA (auth: EL)
Chain Length:607
Number of Molecules:18
Biological Source:Staphylococcus virus 80alpha
Polymer Type:polypeptide(L)
Molecule:Fiber Upper, gp68
Chain IDs:EA (auth: BN), FA (auth: BM), GA (auth: DN), HA (auth: DM), IA (auth: AN), JA (auth: AM), KA (auth: FN), LA (auth: FM), MA (auth: CN), NA (auth: CM), OA (auth: EN), PA (auth: EM)
Chain Length:390
Number of Molecules:12
Biological Source:Staphylococcus virus 80alpha
Polymer Type:polypeptide(L)
Molecule:Tape Measure Protein, gp57
Chain IDs:D (auth: CF), H (auth: BF), L (auth: AF)
Chain Length:1154
Number of Molecules:3
Biological Source:Staphylococcus virus 80alpha
Polymer Type:polypeptide(L)
Molecule:Major Tail Protein, gp53
Chain IDs:QA (auth: EB), RA (auth: EA), SA (auth: BB), TA (auth: BA), UA (auth: DB), VA (auth: DA), WA (auth: AB), XA (auth: AA), YA (auth: FB), ZA (auth: FA), AB (auth: CB), BB (auth: CA)
Chain Length:193
Number of Molecules:12
Biological Source:Staphylococcus virus 80alpha
Ligand Molecules
Primary Citation
Structure of the host cell recognition and penetration machinery of a Staphylococcus aureus bacteriophage.
Plos Pathog. 16 e1008314 e1008314 (2020)
PMID: 32069326 DOI: 10.1371/journal.ppat.1008314

Abstact

Staphylococcus aureus is a common cause of infections in humans. The emergence of virulent, antibiotic-resistant strains of S. aureus is a significant public health concern. Most virulence and resistance factors in S. aureus are encoded by mobile genetic elements, and transduction by bacteriophages represents the main mechanism for horizontal gene transfer. The baseplate is a specialized structure at the tip of bacteriophage tails that plays key roles in host recognition, cell wall penetration, and DNA ejection. We have used high-resolution cryo-electron microscopy to determine the structure of the S. aureus bacteriophage 80α baseplate at 3.75 Å resolution, allowing atomic models to be built for most of the major tail and baseplate proteins, including two tail fibers, the receptor binding protein, and part of the tape measure protein. Our structure provides a structural basis for understanding host recognition, cell wall penetration and DNA ejection in viruses infecting Gram-positive bacteria. Comparison to other phages demonstrates the modular design of baseplate proteins, and the adaptations to the host that take place during the evolution of staphylococci and other pathogens.

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Primary Citation of related structures