6V7Z image
Deposition Date 2019-12-10
Release Date 2020-09-16
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6V7Z
Keywords:
IMMUNE SYSTEM
Title:
Human CD1d presenting alpha-Galactosylceramide in complex with VHH nanobody 1D22
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Lama glama (Taxon ID: 9844)
Host Organism:
Trichoplusia ni
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.75 Å
R-Value Free:
0.25
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
6V7Z validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antigen-presenting glycoprotein CD1d
Gene (Uniprot):CD1D
Chain IDs:A, C
Chain Length:347
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P15813 Pfam ID:PF16497, PF07654
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B, D
Chain Length:100
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P61769 Pfam ID:PF07654
Polymer Type:polypeptide(L)
Molecule:Nanobody VHH ID22
Chain IDs:E, F
Chain Length:118
Number of Molecules:2
Biological Source:Lama glama
Ligand Molecules
AGH
BGC
CL
NA
NAG
PEG
SO4
Primary Citation
A single-domain bispecific antibody targeting CD1d and the NKT T-cell receptor induces a potent antitumor response.
Nat Cancer ? ? ? (2020)
DOI: 10.1038/s43018-020-00111-6
Primary Citation of related structures
6V7Z