6V7Y image
Deposition Date 2019-12-10
Release Date 2020-09-16
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6V7Y
Keywords:
IMMUNE SYSTEM
Title:
Human CD1d presenting alpha-Galactosylceramide in complex with VHH nanobody 1D5
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Lama glama (Taxon ID: 9844)
Host Organism:
Trichoplusia ni
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.40 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.20
Space Group:
P 31 2 1
6V7Y validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antigen-presenting glycoprotein CD1d
Gene (Uniprot):CD1D
Chain IDs:A
Chain Length:347
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P15813 Pfam ID:PF16497, PF07654
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B
Chain Length:100
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61769 Pfam ID:PF07654
Polymer Type:polypeptide(L)
Molecule:Nanobody VHH ID5
Chain IDs:C (auth: F)
Chain Length:127
Number of Molecules:1
Biological Source:Lama glama
Ligand Molecules
AGH
CL
NAG
SO4
Primary Citation
A single-domain bispecific antibody targeting CD1d and the NKT T-cell receptor induces a potent antitumor response.
Nat Cancer ? ? ? (2020)
DOI: 10.1038/s43018-020-00111-6
Primary Citation of related structures
6V7Y