ISDA: 6V6W

Deposition Date 2019-12-06

Release Date 2020-09-23

Last Version Date 2024-10-23

Entry Detail

PDB ID:

6V6W

Keywords:

VIRAL PROTEIN/IMMUNE SYSTEM

Title:

Crystal structure of antibody 438-B11 DSS mutant (Cys98A-100aA) in complex with an uncleaved prefusion optimized (UFO) soluble BG505 trimer and Fab 35O22

Biological Source:

Source Organism:

Human immunodeficiency virus 1 (Taxon ID: 11676)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

6.50 Å

R-Value Free:

0.35

R-Value Work:

0.30

R-Value Observed:

0.31

Space Group:

H 3

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:35O22 Fab Heavy chain
Chain IDs:A (auth: D), G (auth: A)
Chain Length:243
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1

Polymer Type:polypeptide(L)
Molecule:35O22 Fab Light chain
Chain IDs:B (auth: E), H (auth: B)
Chain Length:216
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp120
Gene (Uniprot):env
Chain IDs:C (auth: G), I (auth: C)
Chain Length:485
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1

UniProt ID:Q2N0S6 Pfam ID:PF00516

Polymer Type:polypeptide(L)
Molecule:B11 DSS Fab heavy chain
Chain IDs:D (auth: I), J (auth: F)
Chain Length:235
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1

Polymer Type:polypeptide(L)
Molecule:B11 Fab light chain
Chain IDs:E (auth: J), K (auth: H)
Chain Length:215
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp41
Gene (Uniprot):env
Chain IDs:F (auth: T), L (auth: K)
Chain Length:140
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1

UniProt ID:Q2N0S9 Pfam ID:PF00517

Ligand Molecules

NAG

Primary Citation

A VH1-69 antibody lineage from an infected Chinese donor potently neutralizes HIV-1 by targeting the V3 glycan supersite

Kumar, S, Ju, B, Shapero, B, Lin, X, Ren, L, Zhang, L, Li, D, Zhou, Z, Feng, Y, Sou, C, Mann, C.J, Hao, Y, Sarkar, A, Hou, J, Nunnally, C, Hong, K, Wang, S, Ge, X, Su, B, Landais, E, Sok, D, Zwick, M.B, He, L, Zhu, J, Wilson, I.A, Shao, Y.Show

Sci Adv 6 eabb1328 ? (2020)

DOI: 10.1126/sciadv.abb1328

Primary Citation of related structures