6V6D image
Deposition Date 2019-12-05
Release Date 2020-04-01
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6V6D
Title:
Cryo-EM structure of human pannexin 1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.77 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pannexin-1
Gene (Uniprot):PANX1
Chain IDs:A, B, C, D, E, F, G
Chain Length:435
Number of Molecules:7
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM structures of the ATP release channel pannexin 1.
Nat.Struct.Mol.Biol. 27 373 381 (2020)
PMID: 32231289 DOI: 10.1038/s41594-020-0401-0

Abstact

The plasma membrane adenosine triphosphate (ATP) release channel pannexin 1 (PANX1) has been implicated in many physiological and pathophysiological processes associated with purinergic signaling, including cancer progression, apoptotic cell clearance, inflammation, blood pressure regulation, oocyte development, epilepsy and neuropathic pain. Here we present near-atomic-resolution structures of human and frog PANX1 determined by cryo-electron microscopy that revealed a heptameric channel architecture. Compatible with ATP permeation, the transmembrane pore and cytoplasmic vestibule were exceptionally wide. An extracellular tryptophan ring located at the outer pore created a constriction site, potentially functioning as a molecular sieve that restricts the size of permeable substrates. The amino and carboxyl termini, not resolved in the density map, appeared to be structurally dynamic and might contribute to narrowing of the pore during channel gating. In combination with functional characterization, this work elucidates the previously unknown architecture of pannexin channels and establishes a foundation for understanding their unique channel properties.

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Primary Citation of related structures