6V5P image
Deposition Date 2019-12-04
Release Date 2020-04-22
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6V5P
Title:
EGFR(T790M/V948R) in complex with LN2725
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Epidermal growth factor receptor
Gene (Uniprot):EGFR
Mutations:T790M,V948R
Chain IDs:A, B, C, D
Chain Length:328
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Structural Basis for EGFR Mutant Inhibition by Trisubstituted Imidazole Inhibitors.
J.Med.Chem. 63 4293 4305 (2020)
PMID: 32243152 DOI: 10.1021/acs.jmedchem.0c00200

Abstact

Acquired drug resistance in epidermal growth factor receptor (EGFR) mutant non-small-cell lung cancer is a persistent challenge in cancer therapy. Previous studies of trisubstituted imidazole inhibitors led to the serendipitous discovery of inhibitors that target the drug resistant EGFR(L858R/T790M/C797S) mutant with nanomolar potencies in a reversible binding mechanism. To dissect the molecular basis for their activity, we determined the binding modes of several trisubstituted imidazole inhibitors in complex with the EGFR kinase domain with X-ray crystallography. These structures reveal that the imidazole core acts as an H-bond acceptor for the catalytic lysine (K745) in the "αC-helix out" inactive state. Selective N-methylation of the H-bond accepting nitrogen ablates inhibitor potency, confirming the role of the K745 H-bond in potent, noncovalent inhibition of the C797S variant. Insights from these studies offer new strategies for developing next generation inhibitors targeting EGFR in non-small-cell lung cancer.

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Primary Citation of related structures