6V55 image
Deposition Date 2019-12-03
Release Date 2020-01-15
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6V55
Keywords:
Title:
Full extracellular region of zebrafish Gpr126/Adgrg6
Biological Source:
Source Organism:
Danio rerio (Taxon ID: 7955)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.38 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Adhesion G-protein coupled receptor G6
Gene (Uniprot):adgrg6
Chain IDs:A
Chain Length:788
Number of Molecules:1
Biological Source:Danio rerio
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Adhesion G-protein coupled receptor G6
Gene (Uniprot):adgrg6
Chain IDs:B (auth: Q)
Chain Length:12
Number of Molecules:1
Biological Source:Danio rerio
Primary Citation
Structural basis for adhesion G protein-coupled receptor Gpr126 function.
Nat Commun 11 194 194 (2020)
PMID: 31924782 DOI: 10.1038/s41467-019-14040-1

Abstact

Many drugs target the extracellular regions (ECRs) of cell-surface receptors. The large and alternatively-spliced ECRs of adhesion G protein-coupled receptors (aGPCRs) have key functions in diverse biological processes including neurodevelopment, embryogenesis, and tumorigenesis. However, their structures and mechanisms of action remain unclear, hampering drug development. The aGPCR Gpr126/Adgrg6 regulates Schwann cell myelination, ear canal formation, and heart development; and GPR126 mutations cause myelination defects in human. Here, we determine the structure of the complete zebrafish Gpr126 ECR and reveal five domains including a previously unknown domain. Strikingly, the Gpr126 ECR adopts a closed conformation that is stabilized by an alternatively spliced linker and a conserved calcium-binding site. Alternative splicing regulates ECR conformation and receptor signaling, while mutagenesis of the calcium-binding site abolishes Gpr126 function in vivo. These results demonstrate that Gpr126 ECR utilizes a multi-faceted dynamic approach to regulate receptor function and provide relevant insights for ECR-targeted drug design.

Legend

Protein

Chemical

Disease

Primary Citation of related structures