6V1Y image
Entry Detail
PDB ID:
6V1Y
EMDB ID:
Title:
Cryo-EM Structure of the Hyperpolarization-Activated Potassium Channel KAT1: Octamer
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-11-21
Release Date:
2020-06-03
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Potassium channel KAT1
Chain IDs:A, B, C, D, E (auth: M), F (auth: N), G (auth: O), H (auth: P)
Chain Length:512
Number of Molecules:8
Biological Source:Arabidopsis thaliana
Primary Citation
Electromechanical coupling in the hyperpolarization-activated K + channel KAT1.
Nature 583 145 149 (2020)
PMID: 32461693 DOI: 10.1038/s41586-020-2335-4

Abstact

Voltage-gated potassium (Kv) channels coordinate electrical signalling and control cell volume by gating in response to membrane depolarization or hyperpolarization. However, although voltage-sensing domains transduce transmembrane electric field changes by a common mechanism involving the outward or inward translocation of gating charges1-3, the general determinants of channel gating polarity remain poorly understood4. Here we suggest a molecular mechanism for electromechanical coupling and gating polarity in non-domain-swapped Kv channels on the basis of the cryo-electron microscopy structure of KAT1, the hyperpolarization-activated Kv channel from Arabidopsis thaliana. KAT1 displays a depolarized voltage sensor, which interacts with a closed pore domain directly via two interfaces and indirectly via an intercalated phospholipid. Functional evaluation of KAT1 structure-guided mutants at the sensor-pore interfaces suggests a mechanism in which direct interaction between the sensor and the C-linker hairpin in the adjacent pore subunit is the primary determinant of gating polarity. We suggest that an inward motion of the S4 sensor helix of approximately 5-7 Å can underlie a direct-coupling mechanism, driving a conformational reorientation of the C-linker and ultimately opening the activation gate formed by the S6 intracellular bundle. This direct-coupling mechanism contrasts with allosteric mechanisms proposed for hyperpolarization-activated cyclic nucleotide-gated channels5, and may represent an unexpected link between depolarization- and hyperpolarization-activated channels.

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