6V1V image
Deposition Date 2019-11-21
Release Date 2019-12-18
Last Version Date 2024-04-03
Entry Detail
PDB ID:
6V1V
Keywords:
Title:
VIP3B (VIP3B_2160) adapted for crystallization
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.19 Å
R-Value Free:
0.25
R-Value Work:
0.21
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vegetative insecticidal protein
Gene (Uniprot):vip3Bc1
Mutagens:E514A, K515A, Q517A, K518A, delta466..474->S, delta581..584
Chain IDs:A, B, C, D
Chain Length:796
Number of Molecules:4
Biological Source:Bacillus thuringiensis
Ligand Molecules
Primary Citation
Crystal structure of a Vip3B family insecticidal protein reveals a new fold and a unique tetrameric assembly.
Protein Sci. 29 824 829 (2020)
PMID: 31840313 DOI: 10.1002/pro.3803

Abstact

Vegetatively expressed insecticidal proteins (VIPs) produced by Bacillus thuringiensis fall into several classes of which the third, VIP3, is known for their activity against several key Lepidopteran pests of commercial broad acre crops and because their mode of action does not overlap with that of crystalline insecticidal proteins. The details of the VIP3 structure and mode of action have remained obscure for the quarter century that has passed since their discovery. In the present article, we report the first crystal structure of a full-length VIP3 protein. Crystallization of this target required multiple rounds of construct optimization and screening-over 200 individual sequences were expressed and tested. This protein adopts a novel global fold that combines domains with hitherto unreported topology and containing elements seemingly borrowed from carbohydrate-binding domains, lectins, or from other insecticidal proteins.

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Primary Citation of related structures