6V1P image
Deposition Date 2019-11-20
Release Date 2020-03-25
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6V1P
Title:
Structure of VIM-2 bound to QPX7728 at 1.20 A
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.20 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-lactamase class B VIM-2
Gene (Uniprot):blaVIM-2
Chain IDs:A, B
Chain Length:242
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa
Primary Citation
Discovery of Cyclic Boronic Acid QPX7728, an Ultrabroad-Spectrum Inhibitor of Serine and Metallo-beta-lactamases.
J.Med.Chem. 63 7491 7507 (2020)
PMID: 32150407 DOI: 10.1021/acs.jmedchem.9b01976

Abstact

Despite major advances in the β-lactamase inhibitor field, certain enzymes remain refractory to inhibition by agents recently introduced. Most important among these are the class B (metallo) enzyme NDM-1 of Enterobacteriaceae and the class D (OXA) enzymes of Acinetobacter baumannii. Continuing the boronic acid program that led to vaborbactam, efforts were directed toward expanding the spectrum to allow treatment of a wider range of organisms. Through key structural modifications of a bicyclic lead, stepwise gains in spectrum of inhibition were achieved, ultimately resulting in QPX7728 (35). This compound displays a remarkably broad spectrum of inhibition, including class B and class D enzymes, and is little affected by porin modifications and efflux. Compound 35 is a promising agent for use in combination with a β-lactam antibiotic for the treatment of a wide range of multidrug resistant Gram-negative bacterial infections, by both intravenous and oral administration.

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Primary Citation of related structures
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