6UZ1 image
Deposition Date 2019-11-14
Release Date 2020-10-28
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6UZ1
Keywords:
Title:
Noncanonical binding of single-chain A6 TCR variant S3-4 in complex with Tax/HLA-A2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.14 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 61
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MHC class I antigen, A-2 alpha chain
Chain IDs:A, D (auth: F)
Chain Length:275
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B, E (auth: G)
Chain Length:100
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LEU-LEU-PHE-GLY-TYR-PRO-VAL-TYR-VAL
Chain IDs:C, F (auth: H)
Chain Length:9
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T cell receptor, alpha chain
Chain IDs:G (auth: I), I (auth: D)
Chain Length:110
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T cell receptor, beta chain
Chain IDs:H (auth: J), J (auth: E)
Chain Length:115
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
An Engineered T Cell Receptor Variant Realizes the Limits of Functional Binding Modes.
Biochemistry 59 4163 4175 (2020)
PMID: 33074657 DOI: 10.1021/acs.biochem.0c00689

Abstact

T cell receptors (TCRs) orchestrate cellular immunity by recognizing peptides presented by a range of major histocompatibility complex (MHC) proteins. Naturally occurring TCRs bind the composite peptide/MHC surface, recognizing peptides that are structurally and chemically compatible with the TCR binding site. Here we describe a molecularly evolved TCR variant that binds the human class I MHC protein HLA-A2 independent of the bound peptide, achieved by a drastic perturbation of the TCR binding geometry that places the molecule far from the peptide binding groove. This unique geometry is unsupportive of normal T cell signaling. A substantial divergence between affinity measurements in solution and in two dimensions between proximal cell membranes leads us to attribute the lack of signaling to steric hindrance that limits binding in the confines of a cell-cell interface. Our results provide an example of how receptor binding geometry can impact T cell function and provide further support for the view that germline-encoded residues in TCR binding loops evolved to drive productive TCR recognition and signaling.

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Protein

Chemical

Disease

Primary Citation of related structures