6UYG image
Deposition Date 2019-11-13
Release Date 2020-04-22
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6UYG
Keywords:
Title:
Structure of Hepatitis C Virus Envelope Glycoprotein E2c3 core from genotype 6a bound to broadly neutralizing antibody AR3A and non neutralizing antibody E1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.38 Å
R-Value Free:
0.30
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fab E1 heavy chain
Chain IDs:D (auth: A)
Chain Length:227
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab E1 light chain
Chain IDs:E (auth: B)
Chain Length:219
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein E2
Chain IDs:A (auth: E)
Chain Length:189
Number of Molecules:1
Biological Source:Recombinant Hepatitis C virus HK6a/JFH-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin G-binding protein G
Gene (Uniprot):spg
Chain IDs:F (auth: G)
Chain Length:61
Number of Molecules:1
Biological Source:Streptococcus sp.
Polymer Type:polypeptide(L)
Molecule:Fab AR3A heavy chain
Chain IDs:B (auth: H)
Chain Length:232
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab AR3A light chain
Chain IDs:C (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Proof of concept for rational design of hepatitis C virus E2 core nanoparticle vaccines.
Sci Adv 6 eaaz6225 eaaz6225 (2020)
PMID: 32494617 DOI: 10.1126/sciadv.aaz6225

Abstact

Hepatitis C virus (HCV) envelope glycoproteins E1 and E2 are responsible for cell entry, with E2 being the major target of neutralizing antibodies (NAbs). Here, we present a comprehensive strategy for B cell-based HCV vaccine development through E2 optimization and nanoparticle display. We redesigned variable region 2 in a truncated form (tVR2) on E2 cores derived from genotypes 1a and 6a, resulting in improved stability and antigenicity. Crystal structures of three optimized E2 cores with human cross-genotype NAbs (AR3s) revealed how the modified tVR2 stabilizes E2 without altering key neutralizing epitopes. We then displayed these E2 cores on 24- and 60-meric nanoparticles and achieved substantial yield and purity, as well as enhanced antigenicity. In mice, these nanoparticles elicited more effective NAb responses than soluble E2 cores. Next-generation sequencing (NGS) defined distinct B cell patterns associated with nanoparticle-induced antibody responses, which target the conserved neutralizing epitopes on E2 and cross-neutralize HCV genotypes.

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Primary Citation of related structures