6URM image
Deposition Date 2019-10-23
Release Date 2020-09-16
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6URM
Title:
Crystal structure of vaccine-elicited receptor-binding site targeting antibody LPAF-a.01 in complex with Hemagglutinin H1 A/California/04/2009
Biological Source:
Source Organism:
Influenza A virus (Taxon ID: 11320)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Chain IDs:A (auth: F), D (auth: C)
Chain Length:505
Number of Molecules:2
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:The heavy chain of antibody LPAF-a.01
Chain IDs:B (auth: H), E (auth: D)
Chain Length:227
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:The light chain of antibody LPAF-a.01
Chain IDs:C (auth: L), F (auth: E)
Chain Length:211
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Identification and Structure of a Multidonor Class of Head-Directed Influenza-Neutralizing Antibodies Reveal the Mechanism for Its Recurrent Elicitation.
Cell Rep 32 108088 108088 (2020)
PMID: 32877670 DOI: 10.1016/j.celrep.2020.108088

Abstact

Multidonor antibodies are of interest for vaccine design because they can in principle be elicited in the general population by a common set of immunogens. For influenza, multidonor antibodies have been observed against the hemagglutinin (HA) stem, but not the immunodominant HA head. Here, we identify and characterize a multidonor antibody class (LPAF-a class) targeting the HA head. This class exhibits potent viral entry inhibition against H1N1 A/California/04/2009 (CA09) virus. LPAF-a class antibodies derive from the HV2-70 gene and contain a "Tyr-Gly-Asp"-motif, which occludes the HA-sialic acid binding site as revealed by a co-crystal structure with HA. Both germline-reverted and mature LPAF antibodies potently neutralize CA09 virus and have nanomolar affinities for CA09 HA. Moreover, increased frequencies for LPFA-a class antibodies are observed in humans after a single vaccination. Overall, this work highlights the identification of a multidonor class of head-directed influenza-neutralizing antibodies and delineates the mechanism of their recurrent elicitation in humans.

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