6URA image
Deposition Date 2019-10-23
Release Date 2020-08-19
Last Version Date 2023-11-15
Entry Detail
PDB ID:
6URA
Keywords:
Title:
Crystal structure of RUBISCO from Promineofilum breve
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.17 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribulose bisphosphate carboxylase large chain
Gene (Uniprot):cbbL
Chain IDs:A, B, C, D
Chain Length:463
Number of Molecules:4
Biological Source:Candidatus Promineofilum breve
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KCX A LYS modified residue
Primary Citation
Novel bacterial clade reveals origin of form I Rubisco.
Nat.Plants 6 1158 1166 (2020)
PMID: 32868887 DOI: 10.1038/s41477-020-00762-4

Abstact

Rubisco sustains the biosphere through the fixation of CO2 into biomass. In plants and cyanobacteria, form I Rubisco is structurally comprised of large and small subunits, whereas all other Rubisco forms lack small subunits. The rise of the form I complex through the innovation of small subunits represents a key, yet poorly understood, transition in Rubisco's evolution. Through metagenomic analyses, we discovered a previously uncharacterized clade sister to form I Rubisco that evolved without small subunits. This clade diverged before the evolution of cyanobacteria and the origin of the small subunit; thus, it provides a unique reference point to advance our understanding of form I Rubisco evolution. Structural and kinetic data presented here reveal how a proto-form I Rubisco assembled and functioned without the structural stability imparted from small subunits. Our findings provide insight into a key evolutionary transition of the most abundant enzyme on Earth and the predominant entry point for nearly all global organic carbon.

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Chemical

Disease

Primary Citation of related structures
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