6UQJ image
Deposition Date 2019-10-20
Release Date 2020-07-22
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6UQJ
Keywords:
Title:
Crystal structure of the GH39 enzyme from Xanthomonas axonopodis pv. citri
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.71 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-xylosidase
Chain IDs:A
Chain Length:508
Number of Molecules:1
Biological Source:Xanthomonas axonopodis pv. citri (strain 306)
Primary Citation
Exploring the Molecular Basis for Substrate Affinity and Structural Stability in Bacterial GH39 beta-Xylosidases.
Front Bioeng Biotechnol 8 419 419 (2020)
PMID: 32500063 DOI: 10.3389/fbioe.2020.00419

Abstact

The glycoside hydrolase family 39 (GH39) is a functionally expanding family with limited understanding about the molecular basis for substrate specificity and extremophilicity. In this work, we demonstrate the key role of the positive-subsite region in modulating substrate affinity and how the lack of a C-terminal extension impacts on oligomerization and structural stability of some GH39 members. The crystallographic and SAXS structures of a new GH39 member from the phytopathogen Xanthomonas citri support the importance of an extended C-terminal to promote oligomerization as a molecular strategy to enhance thermal stability. Comparative structural analysis along with site-directed mutagenesis showed that two residues located at the positive-subsite region, Lys166 and Asp167, are critical to substrate affinity and catalytic performance, by inducing local changes in the active site for substrate binding. These findings expand the molecular understanding of the mechanisms involved in substrate recognition and structural stability of the GH39 family, which might be instrumental for biological insights, rational enzyme engineering and utilization in biorefineries.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback