6UJU image
Deposition Date 2019-10-03
Release Date 2020-05-13
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6UJU
Title:
Structure of the HIV-1 gp41 transmembrane domain and cytoplasmic tail (LLP2)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
150
Conformers Submitted:
15
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein GP41
Mutagens:C764S
Chain IDs:A, B, C
Chain Length:112
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Ligand Molecules
Primary Citation
Structural basis of transmembrane coupling of the HIV-1 envelope glycoprotein.
Nat Commun 11 2317 2317 (2020)
PMID: 32385256 DOI: 10.1038/s41467-020-16165-0

Abstact

The prefusion conformation of HIV-1 envelope protein (Env) is recognized by most broadly neutralizing antibodies (bnAbs). Studies showed that alterations of its membrane-related components, including the transmembrane domain (TMD) and cytoplasmic tail (CT), can reshape the antigenic structure of the Env ectodomain. Using nuclear magnetic resonance (NMR) spectroscopy, we determine the structure of an Env segment encompassing the TMD and a large portion of the CT in bicelles. The structure reveals that the CT folds into amphipathic helices that wrap around the C-terminal end of the TMD, thereby forming a support baseplate for the rest of Env. NMR dynamics measurements provide evidences of dynamic coupling across the TMD between the ectodomain and CT. Pseudovirus-based neutralization assays suggest that CT-TMD interaction preferentially affects antigenic structure near the apex of the Env trimer. These results explain why the CT can modulate the Env antigenic properties and may facilitate HIV-1 Env-based vaccine design.

Legend

Protein

Chemical

Disease

Primary Citation of related structures