6UFS image
Deposition Date 2019-09-24
Release Date 2020-05-20
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6UFS
Keywords:
Title:
Crystal structure of ketosteroid isomerase from Pseudomonas putida (pKSI) bound to 5 alpha-dihydronandrolone
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.47 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Steroid Delta-isomerase
Gene (Uniprot):ksi
Chain IDs:A, B
Chain Length:135
Number of Molecules:2
Biological Source:Pseudomonas putida
Ligand Molecules
Primary Citation
A Preorganized Electric Field Leads to Minimal Geometrical Reorientation in the Catalytic Reaction of Ketosteroid Isomerase.
J.Am.Chem.Soc. 142 9993 9998 (2020)
PMID: 32378409 DOI: 10.1021/jacs.0c00383

Abstact

Electrostatic interactions play a pivotal role in enzymatic catalysis and are increasingly modeled explicitly in computational enzyme design; nevertheless, they are challenging to measure experimentally. Using vibrational Stark effect (VSE) spectroscopy, we have measured electric fields inside the active site of the enzyme ketosteroid isomerase (KSI). These studies have shown that these fields can be unusually large, but it has been unclear to what extent they specifically stabilize the transition state (TS) relative to a ground state (GS). In the following, we use crystallography and computational modeling to show that KSI's intrinsic electric field is nearly perfectly oriented to stabilize the geometry of its reaction's TS. Moreover, we find that this electric field adjusts the orientation of its substrate in the ground state so that the substrate needs to only undergo minimal structural changes upon activation to its TS. This work provides evidence that the active site electric field in KSI is preorganized to facilitate catalysis and provides a template for how electrostatic preorganization can be measured in enzymatic systems.

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