6UE0 image
Entry Detail
PDB ID:
6UE0
Keywords:
Title:
Crystal structure of dihydrodipicolinate synthase from Klebsiella pneumoniae bound to pyruvate
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-09-20
Release Date:
2020-02-05
Method Details:
Experimental Method:
Resolution:
1.89 Å
R-Value Free:
0.19
R-Value Work:
0.16
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:4-hydroxy-tetrahydrodipicolinate synthase
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:326
Number of Molecules:2
Biological Source:Klebsiella pneumoniae
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KPI A LYS modified residue
Primary Citation
Mis-annotations of a promising antibiotic target in high-priority gram-negative pathogens.
Febs Lett. 594 1453 1463 (2020)
PMID: 31943170 DOI: 10.1002/1873-3468.13733

Abstact

The rise of antibiotic resistance combined with the lack of new products entering the market has led to bacterial infections becoming one of the biggest threats to global health. Therefore, there is an urgent need to identify novel antibiotic targets, such as dihydrodipicolinate synthase (DHDPS), an enzyme involved in the production of essential metabolites in cell wall and protein synthesis. Here, we utilised a 7-residue sequence motif to identify mis-annotation of multiple DHDPS genes in the high-priority Gram-negative bacteria Acinetobacter baumannii and Klebsiella pneumoniae. We subsequently confirmed these mis-annotations using a combination of enzyme kinetics and X-ray crystallography. Thus, this study highlights the need to ensure genes encoding promising drug targets, like DHDPS, are annotated correctly, especially for clinically important pathogens. PDB ID: 6UE0.

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