6UDK image
Deposition Date 2019-09-19
Release Date 2020-01-29
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6UDK
Title:
HIV-1 bNAb 1-55 in complex with modified BG505 SOSIP-based immunogen RC1 and 10-1074
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:10-1074 Fab Heavy Chain
Chain IDs:D (auth: A), F, H (auth: O)
Chain Length:238
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:10-1074 Fab Light Chain
Gene (Uniprot):IGL@
Chain IDs:E (auth: B), G (auth: I), I (auth: P)
Chain Length:214
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:RC1 variant of HIV-1 Env glycoprotein gp41
Chain IDs:P (auth: C), Q (auth: J), R (auth: Q)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:RC1 variant of HIV-1 Env glycoprotein gp120
Chain IDs:A (auth: G), B (auth: K), C (auth: R)
Chain Length:481
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:1-55 Fab Heavy Chain
Chain IDs:J (auth: M), L (auth: D), N (auth: H)
Chain Length:262
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:1-55 Fab Light Chain
Gene (Uniprot):IGK@
Chain IDs:K (auth: N), M (auth: E), O (auth: L)
Chain Length:234
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

Broadly neutralizing antibodies (bNAbs) represent a promising approach to prevent and treat HIV-1 infection. However, viral escape through mutation of the HIV-1 envelope glycoprotein (Env) limits clinical applications. Here we describe 1-18, a new VH1-46-encoded CD4 binding site (CD4bs) bNAb with outstanding breadth (97%) and potency (GeoMean IC50 = 0.048 μg/mL). Notably, 1-18 is not susceptible to typical CD4bs escape mutations and effectively overcomes HIV-1 resistance to other CD4bs bNAbs. Moreover, mutational antigenic profiling uncovered restricted pathways of HIV-1 escape. Of most promise for therapeutic use, even 1-18 alone fully suppressed viremia in HIV-1-infected humanized mice without selecting for resistant viral variants. A 2.5-Å cryo-EM structure of a 1-18-BG505SOSIP.664 Env complex revealed that these characteristics are likely facilitated by a heavy-chain insertion and increased inter-protomer contacts. The ability of 1-18 to effectively restrict HIV-1 escape pathways provides a new option to successfully prevent and treat HIV-1 infection.

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Primary Citation of related structures