6UBL image
Deposition Date 2019-09-12
Release Date 2020-09-16
Last Version Date 2024-05-22
Entry Detail
PDB ID:
6UBL
Title:
Structure of DynF from the Dynemicin Biosynthesis Pathway of Micromonospora chersina
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DynF
Gene (Uniprot):GA0070603_4197
Chain IDs:A, B
Chain Length:211
Number of Molecules:2
Biological Source:Micromonospora chersina
Ligand Molecules
Primary Citation
The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.
Acta Crystallogr.,Sect.F 78 1 7 (2022)
PMID: 34981769 DOI: 10.1107/S2053230X21012322

Abstact

Dynemicin is an enediyne natural product from Micromonospora chersina ATCC53710. Access to the biosynthetic gene cluster of dynemicin has enabled the in vitro study of gene products within the cluster to decipher their roles in assembling this unique molecule. This paper reports the crystal structure of DynF, the gene product of one of the genes within the biosynthetic gene cluster of dynemicin. DynF is revealed to be a dimeric eight-stranded β-barrel structure with palmitic acid bound within a cavity. The presence of palmitic acid suggests that DynF may be involved in binding the precursor polyene heptaene, which is central to the synthesis of the ten-membered ring of the enediyne core.

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Protein

Chemical

Disease

Primary Citation of related structures