6UAK image
Entry Detail
PDB ID:
6UAK
Keywords:
Title:
LahSb - C-terminal methyltransferase involved in RiPP biosynthesis
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2019-09-10
Release Date:
2019-12-04
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:SAM dependent methyltransferase LahSB
Chain IDs:A
Chain Length:308
Number of Molecules:1
Biological Source:Lachnospiraceae bacterium C6A11
Ligand Molecules
Primary Citation
Characterization of a Dehydratase and Methyltransferase in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides in Lachnospiraceae.
Chembiochem 21 190 199 (2020)
PMID: 31532570 DOI: 10.1002/cbic.201900483

Abstact

As a result of the exponential increase in genomic data, discovery of novel ribosomally synthesized and post-translationally modified peptide natural products (RiPPs) has progressed rapidly in the past decade. The lanthipeptides are a major subset of RiPPs. Through genome mining we identified a novel lanthipeptide biosynthetic gene cluster (lah) from Lachnospiraceae bacterium C6A11, an anaerobic bacterium that is a member of the human microbiota and which is implicated in the development of host disease states such as type 2 diabetes and resistance to Clostridium difficile colonization. The lah cluster encodes at least seven putative precursor peptides and multiple post-translational modification (PTM) enzymes. Two unusual class II lanthipeptide synthetases LahM1/M2 and a substrate-tolerant S-adenosyl-l-methionine (SAM)-dependent methyltransferase LahSB are biochemically characterized in this study. We also present the crystal structure of LahSB in complex with product S-adenosylhomocysteine. This study sets the stage for further exploration of the final products of the lah pathway as well as their potential physiological functions in human/animal gut microbiota.

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