6U8Q image
Deposition Date 2019-09-05
Release Date 2020-02-05
Last Version Date 2025-05-21
Entry Detail
PDB ID:
6U8Q
Title:
CryoEM structure of HIV-1 cleaved synaptic complex (CSC) intasome
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.67 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Integrase
Chain IDs:A, B, E (auth: C), F (auth: D), I, J, K, L, M, N, O, P
Chain Length:364
Number of Molecules:12
Biological Source:Human immunodeficiency virus 1
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (27-MER)
Chain IDs:C (auth: E), G
Chain Length:27
Number of Molecules:2
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (25-MER)
Chain IDs:D (auth: F), H
Chain Length:25
Number of Molecules:2
Biological Source:Escherichia coli
Primary Citation
A Peptide Derived from Lens Epithelium-Derived Growth Factor Stimulates HIV-1 DNA Integration and Facilitates Intasome Structural Studies.
J.Mol.Biol. 432 2055 2066 (2020)
PMID: 32061936 DOI: 10.1016/j.jmb.2020.01.040

Abstact

The low solubility and aggregation properties of HIV-1 integrase (IN) are major obstacles for biochemical and structural studies. The lens epithelium-derived growth factor (LEDGF) is a cellular factor that binds IN and tethers preintegration complexes to chromatin before integration. The LEDGF also stimulates HIV-1 IN DNA strand transfer activity and improves its solubility in vitro. We show that these properties are conferred by a short peptide spanning residues 178 to 197 of the LEDGF that encompasses its AT-hook DNA-binding elements. The peptide stimulates HIV-1 IN activity both in trans and in cis. Fusion of the peptide to either the N- or C-terminus of IN results in maximal stimulation of concerted integration activity and greatly improves the solubility of the protein and nucleoprotein complexes of IN with viral DNA ends (intasomes). High-resolution structures of HIV-1 intasomes are required to understand the mechanism of IN strand transfer inhibitors (INSTIs), which are front-line drugs for the treatment of HIV-1, and how the virus can develop resistance to INSTIs. We have previously determined the structure of the HIV-1 strand transfer complex intasome. The improved biophysical properties of intasomes assembled with LEDGF peptide fusion IN have enabled us to determine the structure of the cleaved synaptic complex intasome, which is the direct target of INSTIs.

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Primary Citation of related structures