6U4B image
Deposition Date 2019-08-25
Release Date 2020-01-22
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6U4B
Keywords:
Title:
WbbM bifunctional glycosytransferase apo structure
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:WbbM protein
Gene (Uniprot):wbbM
Chain IDs:A
Chain Length:606
Number of Molecules:1
Biological Source:Klebsiella pneumoniae
Ligand Molecules
Primary Citation
A bifunctional O-antigen polymerase structure reveals a new glycosyltransferase family.
Nat.Chem.Biol. 16 450 457 (2020)
PMID: 32152541 DOI: 10.1038/s41589-020-0494-0

Abstact

Lipopolysaccharide O-antigen is an attractive candidate for immunotherapeutic strategies targeting antibiotic-resistant Klebsiella pneumoniae. Several K. pneumoniae O-serotypes are based on a shared O2a-antigen backbone repeating unit: (→ 3)-α-Galp-(1 → 3)-β-Galf-(1 →). O2a antigen is synthesized on undecaprenol diphosphate in a pathway involving the O2a polymerase, WbbM, before its export by an ATP-binding cassette transporter. This dual domain polymerase possesses a C-terminal galactopyranosyltransferase resembling known GT8 family enzymes, and an N-terminal DUF4422 domain identified here as a galactofuranosyltransferase defining a previously unrecognized family (GT111). Functional assignment of DUF4422 explains how galactofuranose is incorporated into various polysaccharides of importance in vaccine production and the food industry. In the 2.1-Å resolution structure, three WbbM protomers associate to form a flattened triangular prism connected to a central stalk that orients the active sites toward the membrane. The biochemical, structural and topological properties of WbbM offer broader insight into the mechanisms of assembly of bacterial cell-surface glycans.

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Primary Citation of related structures