6U3U image
Deposition Date 2019-08-22
Release Date 2020-07-01
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6U3U
Keywords:
Title:
Crystal Structure of Shiga Toxin 2K
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.29 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Shiga toxin 2K subunit A
Gene (Uniprot):stx2A
Mutagens:E167Q
Chain IDs:A (auth: B), G (auth: A)
Chain Length:297
Number of Molecules:2
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Shiga toxin 2K subunit B
Gene (Uniprot):vtx2B
Chain IDs:B (auth: C), C (auth: D), D (auth: E), E (auth: H), F (auth: I), H (auth: F), I (auth: G), J, K, L
Chain Length:70
Number of Molecules:10
Biological Source:Escherichia coli
Primary Citation
Structural and Functional Characterization of Stx2k, a New Subtype of Shiga Toxin 2.
Microorganisms 8 ? ? (2019)
PMID: 31861375 DOI: 10.3390/microorganisms8010004

Abstact

Shiga toxin (Stx) is the major virulence factor of Shiga toxin-producing Escherichia coli (STEC). Stx evolves rapidly and, as such, new subtypes continue to emerge that challenge the efficacy of existing disease management and surveillance strategies. A new subtype, Stx2k, was recently identified in E. coli isolated from a wide range of sources including diarrheal patients, animals, and raw meats, and was poorly detected by existing immunoassays. In this study, the structure of Stx2kE167Q was determined at 2.29 Å resolution and the conservation of structure with Stx2a was revealed. A novel polyclonal antibody capable of neutralizing Stx2k and an immunoassay, with a 10-fold increase in sensitivity compared to assays using extant antibodies, were developed. Stx2k is less toxic than Stx2a in Vero cell assays but is similar to Stx2a in receptor-binding preference, thermostability, and acid tolerance. Although Stx2k does not appear to be as potent as Stx2a to Vero cells, the wide distribution and blended virulence profiles of the Stx2k-producing strains suggest that horizontal gene transfer through Stx2k-converting phages could result in the emergence of new and highly virulent pathogens. This study provides useful information and tools for early detection and control of Stx2k-producing E. coli, which could reduce public risk of infection by less-known STECs.

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