6TZC image
Deposition Date 2019-08-12
Release Date 2019-11-20
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6TZC
Title:
Crystal Structure of African Swine Fever Virus A179L with the Autophagy Regulator Beclin
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.41 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Maltose/maltodextrin-binding periplasmic protein
Gene (Uniprot):malE
Chain IDs:A
Chain Length:371
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Apoptosis regulator Bcl-2 homolog
Gene (Uniprot):A179L
Chain IDs:B
Chain Length:154
Number of Molecules:1
Biological Source:African swine fever virus (strain Badajoz 1971 Vero-adapted)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beclin-1
Gene (Uniprot):BECN1
Chain IDs:C
Chain Length:26
Number of Molecules:1
Biological Source:Sus scrofa
Peptide-like Molecules
PRD_900001
Primary Citation
Crystal Structure of African Swine Fever Virus A179L with the Autophagy Regulator Beclin.
Viruses 11 ? ? (2019)
PMID: 31461953 DOI: 10.3390/v11090789

Abstact

Subversion of programmed cell death-based host defence systems is a prominent feature of infections by large DNA viruses. African swine fever virus (ASFV) is a large DNA virus and sole member of the Asfarviridae family that harbours the B-cell lymphoma 2 or Bcl-2 homolog A179L. A179L has been shown to bind to a range of cell death-inducing host proteins, including pro-apoptotic Bcl-2 proteins as well as the autophagy regulator Beclin. Here we report the crystal structure of A179L bound to the Beclin BH3 motif. A179L engages Beclin using the same canonical ligand-binding groove that is utilized to bind to pro-apoptotic Bcl-2 proteins. The mode of binding of Beclin to A179L mirrors that of Beclin binding to human Bcl-2 and Bcl-xL as well as murine γ-herpesvirus 68. The introduction of bulky hydrophobic residues into the A179L ligand-binding groove via site-directed mutagenesis ablates binding of Beclin to A179L, leading to a loss of the ability of A179L to modulate autophagosome formation in Vero cells during starvation. Our findings provide a mechanistic understanding for the potent autophagy inhibitory activity of A179L and serve as a platform for more detailed investigations into the role of autophagy during ASFV infection.

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Primary Citation of related structures