6TYI image
Deposition Date 2019-08-09
Release Date 2019-10-16
Last Version Date 2025-05-14
Entry Detail
PDB ID:
6TYI
Title:
ExbB-ExbD complex in MSP1E3D1 nanodisc
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Biopolymer transport protein ExbB
Gene (Uniprot):exbB
Chain IDs:A, B, C, D, E
Chain Length:244
Number of Molecules:5
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Molecule:Biopolymer transport protein ExbD
Gene (Uniprot):exbD
Chain IDs:F (auth: Y), G (auth: Z)
Chain Length:163
Number of Molecules:2
Biological Source:Escherichia coli (strain K12)
Primary Citation
Cryo-EM structure of the bacterial Ton motor subcomplex ExbB-ExbD provides information on structure and stoichiometry.
Commun Biol 2 358 358 (2019)
PMID: 31602407 DOI: 10.1038/s42003-019-0604-2

Abstact

The TonB-ExbB-ExbD molecular motor harnesses the proton motive force across the bacterial inner membrane to couple energy to transporters at the outer membrane, facilitating uptake of essential nutrients such as iron and cobalamine. TonB physically interacts with the nutrient-loaded transporter to exert a force that opens an import pathway across the outer membrane. Until recently, no high-resolution structural information was available for this unique molecular motor. We published the first crystal structure of ExbB-ExbD in 2016 and showed that five copies of ExbB are arranged as a pentamer around a single copy of ExbD. However, our spectroscopic experiments clearly indicated that two copies of ExbD are present in the complex. To resolve this ambiguity, we used single-particle cryo-electron microscopy to show that the ExbB pentamer encloses a dimer of ExbD in its transmembrane pore, and not a monomer as previously reported. The revised stoichiometry has implications for motor function.

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Primary Citation of related structures