6TVU image
Entry Detail
PDB ID:
6TVU
Keywords:
Title:
Structure of native gp41 derived peptide fusion inhibitor
Biological Source:
PDB Version:
Deposition Date:
2020-01-10
Release Date:
2021-01-27
Method Details:
Experimental Method:
Resolution:
1.25 Å
R-Value Free:
0.21
R-Value Work:
0.16
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Env polyprotein (Fragment)
Chain IDs:A (auth: AaA)
Chain Length:40
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:Transmembrane protein gp41
Chain IDs:B (auth: BBB)
Chain Length:30
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Primary Citation
Systematic Evaluation of Fluorination as Modification for Peptide-Based Fusion Inhibitors against HIV-1 Infection.
Chembiochem 22 3443 3451 (2021)
PMID: 34605595 DOI: 10.1002/cbic.202100417

Abstact

With the emergence of novel viruses, the development of new antivirals is more urgent than ever. A key step in human immunodeficiency virus type 1 (HIV-1) infection is six-helix bundle formation within the envelope protein subunit gp41. Selective disruption of bundle formation by peptides has been shown to be effective; however, these drugs, exemplified by T20, are prone to rapid clearance from the patient. The incorporation of non-natural amino acids is known to improve these pharmacokinetic properties. Here, we evaluate a peptide inhibitor in which a critical Ile residue is replaced by fluorinated analogues. We characterized the influence of the fluorinated analogues on the biophysical properties of the peptide. Furthermore, we show that the fluorinated peptides can block HIV-1 infection of target cells at nanomolar levels. These findings demonstrate that fluorinated amino acids are appropriate tools for the development of novel peptide therapeutics.

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