6TV5 image
Entry Detail
PDB ID:
6TV5
Title:
NMR structure of N-terminal domain from A. argentata tubuliform spidroin (TuSp) at pH 5.5
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-01-09
Release Date:
2021-01-27
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tubuliform spidroin 1
Chain IDs:A, B
Chain Length:137
Number of Molecules:2
Biological Source:Argiope argentata
Ligand Molecules
Primary Citation
Solution Structure of Tubuliform Spidroin N-Terminal Domain and Implications for pH Dependent Dimerization.
Front Mol Biosci 9 936887 936887 (2022)
PMID: 35775078 DOI: 10.3389/fmolb.2022.936887

Abstact

The spidroin N-terminal domain (NT) is responsible for high solubility and pH-dependent assembly of spider silk proteins during storage and fiber formation, respectively. It forms a monomeric five-helix bundle at neutral pH and dimerizes at lowered pH, thereby firmly interconnecting the spidroins. Mechanistic studies with the NTs from major ampullate, minor ampullate, and flagelliform spidroins (MaSp, MiSp, and FlSp) have shown that the pH dependency is conserved between different silk types, although the residues that mediate this process can differ. Here we study the tubuliform spidroin (TuSp) NT from Argiope argentata, which lacks several well conserved residues involved in the dimerization of other NTs. We solve its structure at low pH revealing an antiparallel dimer of two five-α-helix bundles, which contrasts with a previously determined Nephila antipodiana TuSp NT monomer structure. Further, we study a set of mutants and find that the residues participating in the protonation events during dimerization are different from MaSp and MiSp NT. Charge reversal of one of these residues (R117 in TuSp) results in significantly altered electrostatic interactions between monomer subunits. Altogether, the structure and mutant studies suggest that TuSp NT monomers assemble by elimination of intramolecular repulsive charge interactions, which could lead to slight tilting of α-helices.

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Primary Citation of related structures