6TTJ image
Deposition Date 2019-12-27
Release Date 2020-03-11
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6TTJ
Keywords:
Title:
Neutral invertase 2 from Arabidopsis thaliana
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.39 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alkaline/neutral invertase CINV1
Gene (Uniprot):CINV1
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:551
Number of Molecules:12
Biological Source:Arabidopsis thaliana
Ligand Molecules
Primary Citation
Crystal structure of Arabidopsis thaliana neutral invertase 2.
Acta Crystallogr.,Sect.F 76 152 157 (2020)
PMID: 32134001 DOI: 10.1107/S2053230X2000179X

Abstact

The metabolism of sucrose is of crucial importance for life on Earth. In plants, enzymes called invertases split sucrose into glucose and fructose, contributing to the regulation of metabolic fluxes. Invertases differ in their localization and pH optimum. Acidic invertases present in plant cell walls and vacuoles belong to glycoside hydrolase family 32 (GH32) and have an all-β structure. In contrast, neutral invertases are located in the cytosol and organelles such as chloroplasts and mitochondria. These poorly understood enzymes are classified into a separate GH100 family. Recent crystal structures of the closely related neutral invertases InvA and InvB from the cyanobacterium Anabaena revealed a predominantly α-helical fold with unique features compared with other sucrose-metabolizing enzymes. Here, a neutral invertase (AtNIN2) from the model plant Arabidopsis thaliana was heterologously expressed, purified and crystallized. As a result, the first neutral invertase structure from a higher plant has been obtained at 3.4 Å resolution. The hexameric AtNIN2 structure is highly similar to that of InvA, pointing to high evolutionary conservation of neutral invertases.

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Primary Citation of related structures