6TSI image
Entry Detail
PDB ID:
6TSI
Keywords:
Title:
cd1 nitrite reductase NirS with bound dihydro-heme d1
Biological Source:
PDB Version:
Deposition Date:
2019-12-20
Release Date:
2020-11-18
Method Details:
Experimental Method:
Resolution:
2.38 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Nitrite reductase
Chain IDs:A, B
Chain Length:543
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa PAO1
Primary Citation
Structure of heme d 1 -free cd 1 nitrite reductase NirS.
Acta Crystallogr.,Sect.F 76 250 256 (2020)
PMID: 32510465 DOI: 10.1107/S2053230X20006676

Abstact

A key step in anaerobic nitrate respiration is the reduction of nitrite to nitric oxide, which is catalysed by the cd1 nitrite reductase NirS in, for example, the Gram-negative opportunistic pathogen Pseudomonas aeruginosa. Each subunit of this homodimeric enzyme consists of a cytochrome c domain and an eight-bladed β-propeller that binds the uncommon isobacteriochlorin heme d1 as an essential part of its active site. Although NirS has been well studied mechanistically and structurally, the focus of previous studies has been on the active heme d1-bound form. The heme d1-free form of NirS reported here, which represents a premature state of the reductase, adopts an open conformation with the cytochrome c domains moved away from each other with respect to the active enzyme. Further, the movement of a loop around Trp498 seems to be related to a widening of the propeller, allowing easier access to the heme d1-binding side. Finally, a possible link between the open conformation of NirS and flagella formation in P. aeruginosa is discussed.

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