6TS9 image
Deposition Date 2019-12-20
Release Date 2020-03-04
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6TS9
Keywords:
Title:
Crystal structure of GES-5 carbapenemase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.20
R-Value Work:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-lactamase
Gene (Uniprot):blaGES-5
Chain IDs:A, B
Chain Length:287
Number of Molecules:2
Biological Source:Klebsiella pneumoniae
Primary Citation
Targeting the Class A Carbapenemase GES-5 via Virtual Screening.
Biomolecules 10 ? ? (2020)
PMID: 32075131 DOI: 10.3390/biom10020304

Abstact

The worldwide spread of β-lactamases able to hydrolyze last resort carbapenems contributes to the antibiotic resistance problem and menaces the successful antimicrobial treatment of clinically relevant pathogens. Class A carbapenemases include members of the KPC and GES families. While drugs against KPC-type carbapenemases have recently been approved, for GES-type enzymes, no inhibitors have yet been introduced in therapy. Thus, GES carbapenemases represent important drug targets. Here, we present an in silico screening against the most prevalent GES carbapenemase, GES-5, using a lead-like compound library of commercially available compounds. The most promising candidates were selected for in vitro validation in biochemical assays against recombinant GES-5 leading to four derivatives active as high micromolar competitive inhibitors. For the best inhibitors, the ability to inhibit KPC-2 was also evaluated. The discovered inhibitors constitute promising starting points for hit to lead optimization.

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