ISDA

Deposition Date 2019-12-13

Release Date 2020-01-01

Last Version Date 2025-10-01

Entry Detail

PDB ID:

6TPJ

Keywords:

MEMBRANE PROTEIN

Title:

Crystal structure of the Orexin-2 receptor in complex with suvorexant at 2.76 A resolution

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
Pyrococcus abyssi GE5 (Taxon ID: 272844)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.74 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Orexin receptor type 2,GlgA glycogen synthase,Hypocretin receptor-2
Gene (Uniprot):HCRTR2, PAB2292
Mutagens:E54A Y91L D100A V142A R170L L206A Y219A M233A A242L L310V L318A T347A N14D N22D N202D C381W C382W C383W
Chain IDs:A, B
Chain Length:564
Number of Molecules:2
Biological Source:Homo sapiens, Pyrococcus abyssi GE5

UniProt ID:O43614,Q9V2J8 Pfam ID:PF00001, PF13692

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
YCM	A	CYS	modified residue

Ligand Molecules

NH4

OLA

PG4

SUV

Primary Citation

Comparison of Orexin 1 and Orexin 2 Ligand Binding Modes Using X-ray Crystallography and Computational Analysis.

Rappas, M, Ali, A.A.E, Bennett, K.A, Brown, J.D, Bucknell, S.J, Congreve, M, Cooke, R.M, Cseke, G, de Graaf, C, Dore, A.S, Errey, J.C, Jazayeri, A, Marshall, F.H, Mason, J.S, Mould, R, Patel, J.C, Tehan, B.G, Weir, M, Christopher, J.A.Show

J.Med.Chem. 63 1528 1543 (2020)

PMID: 31860301 DOI: 10.1021/acs.jmedchem.9b01787

Abstact

The orexin system, which consists of the two G protein-coupled receptors OX1 and OX2, activated by the neuropeptides OX-A and OX-B, is firmly established as a key regulator of behavioral arousal, sleep, and wakefulness and has been an area of intense research effort over the past two decades. X-ray structures of the receptors in complex with 10 new antagonist ligands from diverse chemotypes are presented, which complement the existing structural information for the system and highlight the critical importance of lipophilic hotspots and water molecules for these peptidergic GPCR targets. Learnings from the structural information regarding the utility of pharmacophore models and how selectivity between OX1 and OX2 can be achieved are discussed.

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Primary Citation of related structures