6TOR image
Deposition Date 2019-12-11
Release Date 2020-04-15
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6TOR
Keywords:
Title:
human O-phosphoethanolamine phospho-lyase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ethanolamine-phosphate phospho-lyase
Gene (Uniprot):ETNPPL
Chain IDs:A, B
Chain Length:499
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural characterization of human O-phosphoethanolamine phospho-lyase.
Acta Crystallogr.,Sect.F 76 160 167 (2020)
PMID: 32254049 DOI: 10.1107/S2053230X20002988

Abstact

Human O-phosphoethanolamine phospho-lyase (hEtnppl; EC 4.2.3.2) is a pyridoxal 5'-phosphate-dependent enzyme that catalyzes the degradation of O-phosphoethanolamine (PEA) into acetaldehyde, phosphate and ammonia. Physiologically, the enzyme is involved in phospholipid metabolism, as PEA is the precursor of phosphatidylethanolamine in the CDP-ethanolamine (Kennedy) pathway. Here, the crystal structure of hEtnppl in complex with pyridoxamine 5'-phosphate was determined at 2.05 Å resolution by molecular replacement using the structure of A1RDF1 from Arthrobacter aurescens TC1 (PDB entry 5g4i) as the search model. Structural analysis reveals that the two proteins share the same general fold and a similar arrangement of active-site residues. These results provide novel and useful information for the complete characterization of the human enzyme.

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