6TOP image
Deposition Date 2019-12-11
Release Date 2020-06-17
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6TOP
Keywords:
Title:
Structure of the PorE C-terminal domain, a protein of T9SS from Porphyromonas gingivalis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:OmpA family protein
Chain IDs:A
Chain Length:154
Number of Molecules:1
Biological Source:Porphyromonas gingivalis JCVI SC001
Polymer Type:polypeptide(L)
Molecule:OmpA family protein
Chain IDs:B, C, D
Chain Length:150
Number of Molecules:3
Biological Source:Porphyromonas gingivalis JCVI SC001
Primary Citation
Crystal structure of Type IX secretion system PorE C-terminal domain from Porphyromonas gingivalis in complex with a peptidoglycan fragment.
Sci Rep 10 7384 7384 (2020)
PMID: 32355178 DOI: 10.1038/s41598-020-64115-z

Abstact

Porphyromonas gingivalis, the major human pathogen associated to periodontal diseases, utilizes the Bacteroidetes-specific type IX secretion system (T9SS) to export virulence factors. PorE is a periplasmic multi-domain lipoprotein associated to the outer membrane that was recently identified as essential for T9SS function. Little is known on T9SS at the structural level, and in particular its interaction with peptidoglycan. This prompted us to carry out structural studies on PorE full length as well as on its four isolated domains. Here we report the crystal structure of the C-terminal OmpA_C-like putative peptidoglycan-binding domain at 1.55 Å resolution. An electron density volume was identified in the protein cleft, making it possible to build a naturally-occurring peptidoglycan fragment. This result suggests that PorE interacts with peptidoglycan and that PorE could anchor T9SS to the cell wall.

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