6TON image
Entry Detail
PDB ID:
6TON
Keywords:
Title:
Crystal structure of human BCL6 BTB domain in complex with compound 25b
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2019-12-11
Release Date:
2020-04-22
Method Details:
Experimental Method:
Resolution:
2.36 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:B-cell lymphoma 6 protein
Chain IDs:A
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ALA-TRP-VAL-ILE-PRO-ALA
Chain IDs:B
Chain Length:6
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation

Abstact

Deregulation of the transcriptional repressor BCL6 enables tumorigenesis of germinal center B-cells, and hence BCL6 has been proposed as a therapeutic target for the treatment of diffuse large B-cell lymphoma (DLBCL). Herein we report the discovery of a series of benzimidazolone inhibitors of the protein-protein interaction between BCL6 and its co-repressors. A subset of these inhibitors were found to cause rapid degradation of BCL6, and optimization of pharmacokinetic properties led to the discovery of 5-((5-chloro-2-((3R,5S)-4,4-difluoro-3,5-dimethylpiperidin-1-yl)pyrimidin-4-yl)amino)-3-(3-hydroxy-3-methylbutyl)-1-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one (CCT369260), which reduces BCL6 levels in a lymphoma xenograft mouse model following oral dosing.

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Primary Citation of related structures