6TNT image
Deposition Date 2019-12-10
Release Date 2021-01-13
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6TNT
Keywords:
Title:
SUMOylated apoAPC/C with repositioned APC2 WHB domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
unidentified (Taxon ID: 32644)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.78 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 1
Gene (Uniprot):ANAPC1
Chain IDs:A
Chain Length:1944
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 11
Gene (Uniprot):ANAPC11
Chain IDs:B
Chain Length:84
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 23 homolog
Gene (Uniprot):CDC23
Chain IDs:C, P
Chain Length:597
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 15
Gene (Uniprot):ANAPC15
Chain IDs:D
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 16
Gene (Uniprot):ANAPC16
Chain IDs:E
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 27 homolog
Gene (Uniprot):CDC27
Chain IDs:F, H
Chain Length:824
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit CDC26
Gene (Uniprot):CDC26
Chain IDs:G, R (auth: W)
Chain Length:85
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 4
Gene (Uniprot):ANAPC4
Chain IDs:I
Chain Length:808
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 16 homolog
Gene (Uniprot):CDC16
Chain IDs:J, K
Chain Length:620
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 10
Gene (Uniprot):ANAPC10
Chain IDs:L
Chain Length:185
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 13
Gene (Uniprot):ANAPC13
Chain IDs:M
Chain Length:74
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 2
Gene (Uniprot):ANAPC2
Chain IDs:N
Chain Length:822
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 5
Gene (Uniprot):ANAPC5
Chain IDs:O
Chain Length:755
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:UNIDENTIFIED PEPTIDE
Chain IDs:Q (auth: T)
Chain Length:15
Number of Molecules:1
Biological Source:unidentified
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex subunit 7
Gene (Uniprot):ANAPC7
Chain IDs:S (auth: X), T (auth: Y)
Chain Length:599
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Molecular mechanisms of APC/C release from spindle assembly checkpoint inhibition by APC/C SUMOylation.
Cell Rep 34 108929 108929 (2021)
PMID: 33789095 DOI: 10.1016/j.celrep.2021.108929

Abstact

The anaphase-promoting complex/cyclosome (APC/C) is an E3 ubiquitin ligase that controls cell cycle transitions. Its regulation by the spindle assembly checkpoint (SAC) is coordinated with the attachment of sister chromatids to the mitotic spindle. APC/C SUMOylation on APC4 ensures timely anaphase onset and chromosome segregation. To understand the structural and functional consequences of APC/C SUMOylation, we reconstituted SUMOylated APC/C for electron cryo-microscopy and biochemical analyses. SUMOylation of the APC/C causes a substantial rearrangement of the WHB domain of APC/C's cullin subunit (APC2WHB). Although APC/CCdc20 SUMOylation results in a modest impact on normal APC/CCdc20 activity, repositioning APC2WHB reduces the affinity of APC/CCdc20 for the mitotic checkpoint complex (MCC), the effector of the SAC. This attenuates MCC-mediated suppression of APC/CCdc20 activity, allowing for more efficient ubiquitination of APC/CCdc20 substrates in the presence of the MCC. Thus, SUMOylation stimulates the reactivation of APC/CCdc20 when the SAC is silenced, contributing to timely anaphase onset.

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Primary Citation of related structures