6TML image
Entry Detail
PDB ID:
6TML
EMDB ID:
Title:
Cryo-EM structure of Toxoplasma gondii mitochondrial ATP synthase hexamer, composite model
Biological Source:
PDB Version:
Deposition Date:
2019-12-04
Release Date:
2020-12-16
Method Details:
Experimental Method:
Resolution:
4.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ATP synthase subunit alpha
Chain IDs:ZA (auth: A1), AB (auth: E1), BB (auth: C1), TB (auth: A2), UB (auth: E2), VB (auth: C2), LE (auth: A3), ME (auth: E3), NE (auth: C3), FF (auth: A4), GF (auth: E4), HF (auth: C4), XH (auth: A5), YH (auth: E5), ZH (auth: C5), RI (auth: A6), SI (auth: E6), TI (auth: C6)
Chain Length:565
Number of Molecules:18
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1), Toxoplasma gondii GT1
Polymer Type:polypeptide(L)
Description:ATP synthase subunit beta
Chain IDs:CB (auth: B1), DB (auth: F1), EB (auth: D1), WB (auth: B2), XB (auth: F2), YB (auth: D2), OE (auth: B3), PE (auth: F3), QE (auth: D3), IF (auth: B4), JF (auth: F4), KF (auth: D4), AI (auth: B5), BI (auth: F5), CI (auth: D5), UI (auth: B6), VI (auth: F6), WI (auth: D6)
Chain Length:560
Number of Molecules:18
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:Oligomycin sensitivity conferring protein (OSCP)
Chain IDs:WA (auth: G1), XA (auth: G2), IE (auth: G3), JE (auth: G4), UH (auth: G5), VH (auth: G6)
Chain Length:314
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:subunit c
Chain IDs:IB (auth: H1), JB (auth: I1), KB (auth: J1), LB (auth: K1), MB (auth: L1), NB (auth: M1), OB (auth: N1), PB (auth: O1), QB (auth: P1), RB (auth: Q1), CC (auth: H2), DC (auth: I2), EC (auth: J2), FC (auth: K2), GC (auth: L2), HC (auth: M2), IC (auth: N2), JC (auth: O2), KC (auth: P2), LC (auth: Q2), UE (auth: H3), VE (auth: I3), WE (auth: J3), XE (auth: K3), YE (auth: L3), ZE (auth: M3), AF (auth: N3), BF (auth: O3), CF (auth: P3), DF (auth: Q3), OF (auth: H4), PF (auth: I4), QF (auth: J4), RF (auth: K4), SF (auth: L4), TF (auth: M4), UF (auth: N4), VF (auth: O4), WF (auth: P4), XF (auth: Q4), GI (auth: H5), HI (auth: I5), II (auth: J5), JI (auth: K5), KI (auth: L5), LI (auth: M5), MI (auth: N5), NI (auth: O5), OI (auth: P5), PI (auth: Q5), AJ (auth: H6), BJ (auth: I6), CJ (auth: J6), DJ (auth: K6), EJ (auth: L6), FJ (auth: M6), GJ (auth: N6), HJ (auth: O6), IJ (auth: P6), JJ (auth: Q6)
Chain Length:166
Number of Molecules:60
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:subunit d
Chain IDs:X (auth: a7), VA (auth: A7), JD (auth: a8), HE (auth: A8), VG (auth: a9), TH (auth: A9)
Chain Length:536
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:subunit b
Chain IDs:M (auth: b7), KA (auth: B7), YC (auth: b8), WD (auth: B8), KG (auth: b9), IH (auth: B9)
Chain Length:571
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG1
Chain IDs:R (auth: c7), PA (auth: C7), DD (auth: c8), BE (auth: C8), PG (auth: c9), NH (auth: C9)
Chain Length:398
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit delta
Chain IDs:GB (auth: d1), AC (auth: d2), SE (auth: d3), MF (auth: d4), EI (auth: d5), YI (auth: d6)
Chain Length:183
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG2
Chain IDs:S (auth: d7), QA (auth: D7), ED (auth: d8), CE (auth: D8), QG (auth: d9), OH (auth: D9)
Chain Length:310
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit epsilon
Chain IDs:HB (auth: e1), BC (auth: e2), TE (auth: e3), NF (auth: e4), FI (auth: e5), ZI (auth: e6)
Chain Length:73
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG3
Chain IDs:K (auth: e7), IA (auth: E7), WC (auth: e8), UD (auth: E8), IG (auth: e9), GH (auth: E9)
Chain Length:325
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG4
Chain IDs:V (auth: f7), TA (auth: F7), HD (auth: f8), FE (auth: F8), TG (auth: f9), RH (auth: F9)
Chain Length:267
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit gamma
Chain IDs:FB (auth: g1), ZB (auth: g2), RE (auth: g3), LF (auth: g4), DI (auth: g5), XI (auth: g6)
Chain Length:314
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG5
Chain IDs:D (auth: g7), BA (auth: G7), PC (auth: g8), ND (auth: G8), BG (auth: g9), ZG (auth: G9)
Chain Length:252
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG6
Chain IDs:J (auth: h7), HA (auth: H7), VC (auth: h8), TD (auth: H8), HG (auth: h9), FH (auth: H9)
Chain Length:239
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:Inhibitor of F1
Chain IDs:YA (auth: i1), SB (auth: i2), KE (auth: i3), EF (auth: i4), WH (auth: i5), QI (auth: i6)
Chain Length:166
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG7
Chain IDs:B (auth: i7), Z (auth: I7), NC (auth: i8), LD (auth: I8), ZF (auth: i9), XG (auth: I9)
Chain Length:236
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:subunit i/j
Chain IDs:G (auth: j7), EA (auth: J7), SC (auth: j8), QD (auth: J8), EG (auth: j9), CH (auth: J9)
Chain Length:229
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:subunit a
Chain IDs:F (auth: k7), DA (auth: K7), RC (auth: k8), PD (auth: K8), DG (auth: k9), BH (auth: K9)
Chain Length:224
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG8
Chain IDs:Q (auth: l7), OA (auth: L7), CD (auth: l8), AE (auth: L8), OG (auth: l9), MH (auth: L9)
Chain Length:208
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:subunit 8
Chain IDs:T (auth: m7), RA (auth: M7), FD (auth: m8), DE (auth: M8), RG (auth: m9), PH (auth: M9)
Chain Length:205
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG9
Chain IDs:U (auth: n7), SA (auth: N7), GD (auth: n8), EE (auth: N8), SG (auth: n9), QH (auth: N9)
Chain Length:166
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:subunit k
Chain IDs:E (auth: o7), CA (auth: O7), QC (auth: o8), OD (auth: O8), CG (auth: o9), AH (auth: O9)
Chain Length:157
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG10
Chain IDs:O (auth: p7), MA (auth: P7), AD (auth: p8), YD (auth: P8), MG (auth: p9), KH (auth: P9)
Chain Length:138
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG11
Chain IDs:A (auth: q7), Y (auth: Q7), MC (auth: q8), KD (auth: Q8), YF (auth: q9), WG (auth: Q9)
Chain Length:134
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG12
Chain IDs:N (auth: r7), LA (auth: R7), ZC (auth: r8), XD (auth: R8), LG (auth: r9), JH (auth: R9)
Chain Length:134
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG13
Chain IDs:H (auth: s7), FA (auth: S7), TC (auth: s8), RD (auth: S8), FG (auth: s9), DH (auth: S9)
Chain Length:128
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG14
Chain IDs:C (auth: t7), AA (auth: T7), OC (auth: t8), MD (auth: T8), AG (auth: t9), YG (auth: T9)
Chain Length:133
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG15
Chain IDs:I (auth: u7), GA (auth: U7), UC (auth: u8), SD (auth: U8), GG (auth: u9), EH (auth: U9)
Chain Length:126
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:subunit f
Chain IDs:P (auth: v7), NA (auth: V7), BD (auth: v8), ZD (auth: V8), NG (auth: v9), LH (auth: V9)
Chain Length:111
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG16
Chain IDs:W (auth: w7), UA (auth: W7), ID (auth: w8), GE (auth: W8), UG (auth: w9), SH (auth: W9)
Chain Length:106
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Polymer Type:polypeptide(L)
Description:ATPTG17,ATPTG17,ATPTG17
Chain IDs:L (auth: x7), JA (auth: X7), XC (auth: x8), VD (auth: X8), JG (auth: x9), HH (auth: X9)
Chain Length:83
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1), Toxoplasma gondii GT1
Ligand Molecules
Primary Citation
ATP synthase hexamer assemblies shape cristae of Toxoplasma mitochondria.
Nat Commun 12 120 120 (2021)
PMID: 33402698 DOI: 10.1038/s41467-020-20381-z

Abstact

Mitochondrial ATP synthase plays a key role in inducing membrane curvature to establish cristae. In Apicomplexa causing diseases such as malaria and toxoplasmosis, an unusual cristae morphology has been observed, but its structural basis is unknown. Here, we report that the apicomplexan ATP synthase assembles into cyclic hexamers, essential to shape their distinct cristae. Cryo-EM was used to determine the structure of the hexamer, which is held together by interactions between parasite-specific subunits in the lumenal region. Overall, we identified 17 apicomplexan-specific subunits, and a minimal and nuclear-encoded subunit-a. The hexamer consists of three dimers with an extensive dimer interface that includes bound cardiolipins and the inhibitor IF1. Cryo-ET and subtomogram averaging revealed that hexamers arrange into ~20-megadalton pentagonal pyramids in the curved apical membrane regions. Knockout of the linker protein ATPTG11 resulted in the loss of pentagonal pyramids with concomitant aberrantly shaped cristae. Together, this demonstrates that the unique macromolecular arrangement is critical for the maintenance of cristae morphology in Apicomplexa.

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Disease

Primary Citation of related structures