6TML image
Deposition Date 2019-12-04
Release Date 2020-12-16
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6TML
Title:
Cryo-EM structure of Toxoplasma gondii mitochondrial ATP synthase hexamer, composite model
Biological Source:
Method Details:
Experimental Method:
Resolution:
4.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit alpha
Gene (Uniprot):TGGT1_204400
Chain IDs:ZA (auth: A1), AB (auth: E1), BB (auth: C1), TB (auth: A2), UB (auth: E2), VB (auth: C2), LE (auth: A3), ME (auth: E3), NE (auth: C3), FF (auth: A4), GF (auth: E4), HF (auth: C4), XH (auth: A5), YH (auth: E5), ZH (auth: C5), RI (auth: A6), SI (auth: E6), TI (auth: C6)
Chain Length:565
Number of Molecules:18
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1), Toxoplasma gondii GT1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit beta
Gene (Uniprot):TGGT1_261950
Chain IDs:CB (auth: B1), DB (auth: F1), EB (auth: D1), WB (auth: B2), XB (auth: F2), YB (auth: D2), OE (auth: B3), PE (auth: F3), QE (auth: D3), IF (auth: B4), JF (auth: F4), KF (auth: D4), AI (auth: B5), BI (auth: F5), CI (auth: D5), UI (auth: B6), VI (auth: F6), WI (auth: D6)
Chain Length:560
Number of Molecules:18
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oligomycin sensitivity conferring protein (OSCP)
Gene (Uniprot):TGGT1_284540
Chain IDs:WA (auth: G1), XA (auth: G2), IE (auth: G3), JE (auth: G4), UH (auth: G5), VH (auth: G6)
Chain Length:314
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:subunit c
Gene (Uniprot):TGGT1_249720
Chain IDs:IB (auth: H1), JB (auth: I1), KB (auth: J1), LB (auth: K1), MB (auth: L1), NB (auth: M1), OB (auth: N1), PB (auth: O1), QB (auth: P1), RB (auth: Q1), CC (auth: H2), DC (auth: I2), EC (auth: J2), FC (auth: K2), GC (auth: L2), HC (auth: M2), IC (auth: N2), JC (auth: O2), KC (auth: P2), LC (auth: Q2), UE (auth: H3), VE (auth: I3), WE (auth: J3), XE (auth: K3), YE (auth: L3), ZE (auth: M3), AF (auth: N3), BF (auth: O3), CF (auth: P3), DF (auth: Q3), OF (auth: H4), PF (auth: I4), QF (auth: J4), RF (auth: K4), SF (auth: L4), TF (auth: M4), UF (auth: N4), VF (auth: O4), WF (auth: P4), XF (auth: Q4), GI (auth: H5), HI (auth: I5), II (auth: J5), JI (auth: K5), KI (auth: L5), LI (auth: M5), MI (auth: N5), NI (auth: O5), OI (auth: P5), PI (auth: Q5), AJ (auth: H6), BJ (auth: I6), CJ (auth: J6), DJ (auth: K6), EJ (auth: L6), FJ (auth: M6), GJ (auth: N6), HJ (auth: O6), IJ (auth: P6), JJ (auth: Q6)
Chain Length:166
Number of Molecules:60
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:subunit d
Gene (Uniprot):TGGT1_268835
Chain IDs:X (auth: a7), VA (auth: A7), JD (auth: a8), HE (auth: A8), VG (auth: a9), TH (auth: A9)
Chain Length:536
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:subunit b
Gene (Uniprot):TGGT1_231410
Chain IDs:M (auth: b7), KA (auth: B7), YC (auth: b8), WD (auth: B8), KG (auth: b9), IH (auth: B9)
Chain Length:571
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG1
Gene (Uniprot):TGGT1_246540
Chain IDs:R (auth: c7), PA (auth: C7), DD (auth: c8), BE (auth: C8), PG (auth: c9), NH (auth: C9)
Chain Length:398
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit delta
Gene (Uniprot):TGGT1_226000
Chain IDs:GB (auth: d1), AC (auth: d2), SE (auth: d3), MF (auth: d4), EI (auth: d5), YI (auth: d6)
Chain Length:183
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG2
Gene (Uniprot):TGGT1_282180
Chain IDs:S (auth: d7), QA (auth: D7), ED (auth: d8), CE (auth: D8), QG (auth: d9), OH (auth: D9)
Chain Length:310
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit epsilon
Gene (Uniprot):TGGT1_314820
Chain IDs:HB (auth: e1), BC (auth: e2), TE (auth: e3), NF (auth: e4), FI (auth: e5), ZI (auth: e6)
Chain Length:73
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG3
Gene (Uniprot):TGGT1_218940
Chain IDs:K (auth: e7), IA (auth: E7), WC (auth: e8), UD (auth: E8), IG (auth: e9), GH (auth: E9)
Chain Length:325
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG4
Gene (Uniprot):TGGT1_201800
Chain IDs:V (auth: f7), TA (auth: F7), HD (auth: f8), FE (auth: F8), TG (auth: f9), RH (auth: F9)
Chain Length:267
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit gamma
Gene (Uniprot):TGGT1_231910
Chain IDs:FB (auth: g1), ZB (auth: g2), RE (auth: g3), LF (auth: g4), DI (auth: g5), XI (auth: g6)
Chain Length:314
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG5
Gene (Uniprot):TGGT1_270360
Chain IDs:D (auth: g7), BA (auth: G7), PC (auth: g8), ND (auth: G8), BG (auth: g9), ZG (auth: G9)
Chain Length:252
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG6
Gene (Uniprot):TGGT1_223040
Chain IDs:J (auth: h7), HA (auth: H7), VC (auth: h8), TD (auth: H8), HG (auth: h9), FH (auth: H9)
Chain Length:239
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Inhibitor of F1
Gene (Uniprot):TGGT1_215350
Chain IDs:YA (auth: i1), SB (auth: i2), KE (auth: i3), EF (auth: i4), WH (auth: i5), QI (auth: i6)
Chain Length:166
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG7
Gene (Uniprot):TGGT1_290710
Chain IDs:B (auth: i7), Z (auth: I7), NC (auth: i8), LD (auth: I8), ZF (auth: i9), XG (auth: I9)
Chain Length:236
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:subunit i/j
Gene (Uniprot):TGGT1_290030
Chain IDs:G (auth: j7), EA (auth: J7), SC (auth: j8), QD (auth: J8), EG (auth: j9), CH (auth: J9)
Chain Length:229
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:subunit a
Gene (Uniprot):TGGT1_310360
Chain IDs:F (auth: k7), DA (auth: K7), RC (auth: k8), PD (auth: K8), DG (auth: k9), BH (auth: K9)
Chain Length:224
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG8
Gene (Uniprot):TGGT1_258060
Chain IDs:Q (auth: l7), OA (auth: L7), CD (auth: l8), AE (auth: L8), OG (auth: l9), MH (auth: L9)
Chain Length:208
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:subunit 8
Gene (Uniprot):TGGT1_208440
Chain IDs:T (auth: m7), RA (auth: M7), FD (auth: m8), DE (auth: M8), RG (auth: m9), PH (auth: M9)
Chain Length:205
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG9
Gene (Uniprot):TGGT1_285510
Chain IDs:U (auth: n7), SA (auth: N7), GD (auth: n8), EE (auth: N8), SG (auth: n9), QH (auth: N9)
Chain Length:166
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:subunit k
Gene (Uniprot):TGGT1_260180
Chain IDs:E (auth: o7), CA (auth: O7), QC (auth: o8), OD (auth: O8), CG (auth: o9), AH (auth: O9)
Chain Length:157
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG10
Gene (Uniprot):TGGT1_214930
Chain IDs:O (auth: p7), MA (auth: P7), AD (auth: p8), YD (auth: P8), MG (auth: p9), KH (auth: P9)
Chain Length:138
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG11
Gene (Uniprot):TGGT1_263990
Chain IDs:A (auth: q7), Y (auth: Q7), MC (auth: q8), KD (auth: Q8), YF (auth: q9), WG (auth: Q9)
Chain Length:134
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG12
Gene (Uniprot):TGGT1_245450
Chain IDs:N (auth: r7), LA (auth: R7), ZC (auth: r8), XD (auth: R8), LG (auth: r9), JH (auth: R9)
Chain Length:134
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG13
Gene (Uniprot):TGGT1_225730
Chain IDs:H (auth: s7), FA (auth: S7), TC (auth: s8), RD (auth: S8), FG (auth: s9), DH (auth: S9)
Chain Length:128
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG14
Gene (Uniprot):TGGT1_263080
Chain IDs:C (auth: t7), AA (auth: T7), OC (auth: t8), MD (auth: T8), AG (auth: t9), YG (auth: T9)
Chain Length:133
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG15
Gene (Uniprot):TGGT1_247410
Chain IDs:I (auth: u7), GA (auth: U7), UC (auth: u8), SD (auth: U8), GG (auth: u9), EH (auth: U9)
Chain Length:126
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:subunit f
Gene (Uniprot):TGGT1_215610
Chain IDs:P (auth: v7), NA (auth: V7), BD (auth: v8), ZD (auth: V8), NG (auth: v9), LH (auth: V9)
Chain Length:111
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG16
Gene (Uniprot):TGGT1_211060
Chain IDs:W (auth: w7), UA (auth: W7), ID (auth: w8), GE (auth: W8), UG (auth: w9), SH (auth: W9)
Chain Length:106
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPTG17,ATPTG17,ATPTG17
Gene (Uniprot):TGGT1_310180
Chain IDs:L (auth: x7), JA (auth: X7), XC (auth: x8), VD (auth: X8), JG (auth: x9), HH (auth: X9)
Chain Length:83
Number of Molecules:6
Biological Source:Toxoplasma gondii (strain ATCC 50853 / GT1), Toxoplasma gondii GT1
Ligand Molecules
Primary Citation
ATP synthase hexamer assemblies shape cristae of Toxoplasma mitochondria.
Nat Commun 12 120 120 (2021)
PMID: 33402698 DOI: 10.1038/s41467-020-20381-z

Abstact

Mitochondrial ATP synthase plays a key role in inducing membrane curvature to establish cristae. In Apicomplexa causing diseases such as malaria and toxoplasmosis, an unusual cristae morphology has been observed, but its structural basis is unknown. Here, we report that the apicomplexan ATP synthase assembles into cyclic hexamers, essential to shape their distinct cristae. Cryo-EM was used to determine the structure of the hexamer, which is held together by interactions between parasite-specific subunits in the lumenal region. Overall, we identified 17 apicomplexan-specific subunits, and a minimal and nuclear-encoded subunit-a. The hexamer consists of three dimers with an extensive dimer interface that includes bound cardiolipins and the inhibitor IF1. Cryo-ET and subtomogram averaging revealed that hexamers arrange into ~20-megadalton pentagonal pyramids in the curved apical membrane regions. Knockout of the linker protein ATPTG11 resulted in the loss of pentagonal pyramids with concomitant aberrantly shaped cristae. Together, this demonstrates that the unique macromolecular arrangement is critical for the maintenance of cristae morphology in Apicomplexa.

Legend

Protein

Chemical

Disease

Primary Citation of related structures