6TJV image
Deposition Date 2019-11-27
Release Date 2020-02-19
Last Version Date 2025-10-01
Entry Detail
PDB ID:
6TJV
Title:
Structure of the NDH-1MS complex from Thermosynechococcus elongatus
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 1
Gene (Uniprot):ndhA
Chain IDs:A
Chain Length:372
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 2
Gene (Uniprot):ndhB
Chain IDs:B
Chain Length:515
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 3
Gene (Uniprot):ndhC
Chain IDs:C
Chain Length:132
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase subunit 4
Gene (Uniprot):ndhD3
Chain IDs:D
Chain Length:501
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 4L
Gene (Uniprot):ndhE
Chain IDs:E
Chain Length:101
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase subunit 5
Gene (Uniprot):ndhF3
Chain IDs:F
Chain Length:611
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase subunit 6
Gene (Uniprot):ndhG
Chain IDs:G
Chain Length:200
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit H
Gene (Uniprot):ndhH
Chain IDs:H
Chain Length:394
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit I
Gene (Uniprot):ndhI
Chain IDs:I
Chain Length:196
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit J
Gene (Uniprot):ndhJ
Chain IDs:J
Chain Length:168
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit K
Gene (Uniprot):ndhK
Chain IDs:K
Chain Length:237
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit L
Gene (Uniprot):ndhL
Chain IDs:L
Chain Length:76
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit M
Gene (Uniprot):ndhM
Chain IDs:M
Chain Length:111
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit N
Gene (Uniprot):ndhN
Chain IDs:N
Chain Length:150
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit O
Gene (Uniprot):ndhO
Chain IDs:O
Chain Length:70
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tlr0906 protein
Gene (Uniprot):tlr0906
Chain IDs:P
Chain Length:437
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tll0220 protein
Gene (Uniprot):tll0220
Chain IDs:Q
Chain Length:149
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tlr0636 protein
Gene (Uniprot):tlr0636
Chain IDs:R (auth: S)
Chain Length:110
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus (strain BP-1)
Primary Citation
Redox-coupled proton pumping drives carbon concentration in the photosynthetic complex I.
Nat Commun 11 494 494 (2020)
PMID: 31980611 DOI: 10.1038/s41467-020-14347-4

Abstact

Photosynthetic organisms capture light energy to drive their energy metabolism, and employ the chemical reducing power to convert carbon dioxide (CO2) into organic molecules. Photorespiration, however, significantly reduces the photosynthetic yields. To survive under low CO2 concentrations, cyanobacteria evolved unique carbon-concentration mechanisms that enhance the efficiency of photosynthetic CO2 fixation, for which the molecular principles have remained unknown. We show here how modular adaptations enabled the cyanobacterial photosynthetic complex I to concentrate CO2 using a redox-driven proton-pumping machinery. Our cryo-electron microscopy structure at 3.2 Å resolution shows a catalytic carbonic anhydrase module that harbours a Zn2+ active site, with connectivity to proton-pumping subunits that are activated by electron transfer from photosystem I. Our findings illustrate molecular principles in the photosynthetic complex I machinery that enabled cyanobacteria to survive in drastically changing CO2 conditions.

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Primary Citation of related structures