6THV image
Entry Detail
PDB ID:
6THV
Keywords:
Title:
X-ray structure of the Danio rerio histone deacetylase 6 (HDAC6; catalytic domain 2) in complex with Tubastatin A
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-11-21
Release Date:
2020-07-15
Method Details:
Experimental Method:
Resolution:
1.10 Å
R-Value Free:
0.16
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Histone deacetylase 6
Chain IDs:A
Chain Length:359
Number of Molecules:1
Biological Source:Danio rerio
Primary Citation
Structural and in Vivo Characterization of Tubastatin A, a Widely Used Histone Deacetylase 6 Inhibitor.
Acs Med.Chem.Lett. 11 706 712 (2020)
PMID: 32435374 DOI: 10.1021/acsmedchemlett.9b00560

Abstact

Tubastatin A, a tetrahydro-γ-carboline-capped selective HDAC6 inhibitor (HDAC6i), was rationally designed 10 years ago, and has become the best investigated HDAC6i to date. It shows efficacy in various neurological disease animal models, as HDAC6 plays a crucial regulatory role in axonal transport deficits, protein aggregation, as well as oxidative stress. In this work, we provide new insights into this HDAC6i by investigating the molecular basis of its interactions with HDAC6 through X-ray crystallography, determining its functional capability to elevate the levels of acetylated α-tubulin in vitro and in vivo, correlating PK/PD profiles to determine effective doses in plasma and brain, and finally assessing its therapeutic potential toward psychiatric diseases through use of the SmartCube screening platform.

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Primary Citation of related structures