6TGK image
Entry Detail
PDB ID:
6TGK
Keywords:
Title:
Domain swapped E6AP C-lobe dimer
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-11-16
Release Date:
2020-02-26
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 4 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ubiquitin-protein ligase E3A
Chain IDs:A (auth: C)
Chain Length:105
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Crystal structure of the catalytic C-lobe of the HECT-type ubiquitin ligase E6AP.
Protein Sci. 29 1550 1554 (2020)
PMID: 31994269 DOI: 10.1002/pro.3832

Abstact

The HECT-type ubiquitin ligase E6AP (UBE3A) is critically involved in several neurodevelopmental disorders and human papilloma virus-induced cervical tumorigenesis; the structural mechanisms underlying the activity of this crucial ligase, however, are incompletely understood. Here, we report a crystal structure of the C-terminal lobe ("C-lobe") of the catalytic domain of E6AP that reveals two molecules in a domain-swapped, dimeric arrangement. Interestingly, the molecular hinge that enables this structural reorganization with respect to the monomeric fold coincides with the active-site region. While such dimerization is unlikely to occur in the context of full-length E6AP, we noticed a similar domain swap in a crystal structure of the isolated C-lobe of another HECT-type ubiquitin ligase, HERC6. This may point to conformational strain in the active-site region of HECT-type ligases with possible implications for catalysis. SIGNIFICANCE STATEMENT: The HECT-type ubiquitin ligase E6AP has key roles in human papilloma virus-induced cervical tumorigenesis and certain neurodevelopmental disorders. Here, we present a crystal structure of the C-terminal, catalytic lobe of E6AP, providing basic insight into the conformational properties of this functionally critical region of HECT-type ligases.

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