6TGA image
Entry Detail
PDB ID:
6TGA
EMDB ID:
Keywords:
Title:
Cryo-EM Structure of as isolated form of NAD+-dependent Formate Dehydrogenase from Rhodobacter capsulatus
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-11-15
Release Date:
2020-04-22
Method Details:
Experimental Method:
Resolution:
3.26 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Formate dehydrogenase subunit alpha
Chain IDs:A, E
Chain Length:958
Number of Molecules:2
Biological Source:Rhodobacter capsulatus
Polymer Type:polypeptide(L)
Description:Formate dehydrogenase subunit beta
Chain IDs:B, F
Chain Length:500
Number of Molecules:2
Biological Source:Rhodobacter capsulatus
Polymer Type:polypeptide(L)
Description:NAD-dependent formate dehydrogenase subunit delta
Chain IDs:D, H
Chain Length:71
Number of Molecules:2
Biological Source:Rhodobacter capsulatus
Polymer Type:polypeptide(L)
Description:Formate dehydrogenase subunit gamma
Chain IDs:C (auth: G), G (auth: C)
Chain Length:150
Number of Molecules:2
Biological Source:Rhodobacter capsulatus
Primary Citation
Cryo-EM structures reveal intricate Fe-S cluster arrangement and charging in Rhodobacter capsulatus formate dehydrogenase.
Nat Commun 11 1912 1912 (2020)
PMID: 32313256 DOI: 10.1038/s41467-020-15614-0

Abstact

Metal-containing formate dehydrogenases (FDH) catalyse the reversible oxidation of formate to carbon dioxide at their molybdenum or tungsten active site. They display a diverse subunit and cofactor composition, but structural information on these enzymes is limited. Here we report the cryo-electron microscopic structures of the soluble Rhodobacter capsulatus FDH (RcFDH) as isolated and in the presence of reduced nicotinamide adenine dinucleotide (NADH). RcFDH assembles into a 360 kDa dimer of heterotetramers revealing a putative interconnection of electron pathway chains. In the presence of NADH, the RcFDH structure shows charging of cofactors, indicative of an increased electron load.

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