6TF9 image
Deposition Date 2019-11-13
Release Date 2019-12-11
Last Version Date 2024-05-22
Entry Detail
PDB ID:
6TF9
Keywords:
Title:
Structure of the vertebrate gamma-Tubulin Ring Complex
Biological Source:
Source Organism:
Xenopus laevis (Taxon ID: 8355)
Method Details:
Experimental Method:
Resolution:
4.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Helix 1
Chain IDs:A (auth: AP1)
Chain Length:29
Number of Molecules:1
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Belt helices 1,2,3,4
Chain IDs:B (auth: CP1), G (auth: HP1), H (auth: IP1), W (auth: XP1)
Chain Length:906
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Belt helix 5
Chain IDs:C (auth: DP1)
Chain Length:31
Number of Molecules:1
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Belt helix 6
Chain IDs:D (auth: EP1)
Chain Length:23
Number of Molecules:1
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Belt helix 7
Chain IDs:E (auth: FP1)
Chain Length:906
Number of Molecules:1
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Belt helices 8,9,10
Chain IDs:F (auth: GP1), K (auth: LP1), M (auth: NP1)
Chain Length:15
Number of Molecules:3
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Belt helices 11,12
Chain IDs:I (auth: JP1), UA (auth: vP1)
Chain Length:14
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Belt helices 13,14,15 and Helix 2
Chain IDs:J (auth: KP1), N (auth: OP1), O (auth: PP1), TA (auth: uP1)
Chain Length:451
Number of Molecules:4
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Belt helix 16
Chain IDs:L (auth: MP1)
Chain Length:17
Number of Molecules:1
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gamma-tubulin complex component 3 homolog
Gene (Uniprot):tubgcp3
Chain IDs:P (auth: QP1), BA (auth: cP1), CA (auth: dP1), DA (auth: eP1), EA (auth: fP1)
Chain Length:906
Number of Molecules:5
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Gamma-tubulin complex component 2
Chain IDs:Q (auth: RP1), X (auth: YP1), Y (auth: ZP1), Z (auth: aP1), AA (auth: bP1)
Chain Length:29
Number of Molecules:5
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gamma tubulin ring protein
Gene (Uniprot):tubgcp6.L
Chain IDs:R (auth: SP1)
Chain Length:451
Number of Molecules:1
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin gamma-1 chain
Gene (Uniprot):tubg1
Chain IDs:S (auth: TP1), GA (auth: hP1), HA (auth: iP1), JA (auth: kP1), KA (auth: lP1), LA (auth: mP1), MA (auth: nP1), NA (auth: oP1), OA (auth: pP1), PA (auth: qP1), QA (auth: rP1), RA (auth: sP1), SA (auth: tP1), VA (auth: wP1)
Chain Length:13
Number of Molecules:14
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gamma-tubulin complex component
Gene (Uniprot):LOC108708438
Chain IDs:T (auth: UP1)
Chain Length:1019
Number of Molecules:1
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gamma-tubulin complex component
Gene (Uniprot):tubgcp4.L
Chain IDs:U (auth: VP1), V (auth: WP1)
Chain Length:14
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polypeptide(L)
Molecule:Belt helix 17
Chain IDs:FA (auth: gP1)
Chain Length:15
Number of Molecules:1
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin, cytoplasmic 1
Gene (Uniprot):actb
Chain IDs:IA (auth: jP1)
Chain Length:14
Number of Molecules:1
Biological Source:Xenopus laevis
Ligand Molecules
Primary Citation
Insights into the assembly and activation of the microtubule nucleator gamma-TuRC.
Nature 578 467 471 (2020)
PMID: 31856152 DOI: 10.1038/s41586-019-1896-6

Abstact

Microtubules are dynamic polymers of α- and β-tubulin and have crucial roles in cell signalling, cell migration, intracellular transport and chromosome segregation1. They assemble de novo from αβ-tubulin dimers in an essential process termed microtubule nucleation. Complexes that contain the protein γ-tubulin serve as structural templates for the microtubule nucleation reaction2. In vertebrates, microtubules are nucleated by the 2.2-megadalton γ-tubulin ring complex (γ-TuRC), which comprises γ-tubulin, five related γ-tubulin complex proteins (GCP2-GCP6) and additional factors3. GCP6 is unique among the GCP proteins because it carries an extended insertion domain of unknown function. Our understanding of microtubule formation in cells and tissues is limited by a lack of high-resolution structural information on the γ-TuRC. Here we present the cryo-electron microscopy structure of γ-TuRC from Xenopus laevis at 4.8 Å global resolution, and identify a 14-spoked arrangement of GCP proteins and γ-tubulins in a partially flexible open left-handed spiral with a uniform sequence of GCP variants. By forming specific interactions with other GCP proteins, the GCP6-specific insertion domain acts as a scaffold for the assembly of the γ-TuRC. Unexpectedly, we identify actin as a bona fide structural component of the γ-TuRC with functional relevance in microtubule nucleation. The spiral geometry of γ-TuRC is suboptimal for microtubule nucleation and a controlled conformational rearrangement of the γ-TuRC is required for its activation. Collectively, our cryo-electron microscopy reconstructions provide detailed insights into the molecular organization, assembly and activation mechanism of vertebrate γ-TuRC, and will serve as a framework for the mechanistic understanding of fundamental biological processes associated with microtubule nucleation, such as meiotic and mitotic spindle formation and centriole biogenesis4.

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