6TER image
Deposition Date 2019-11-12
Release Date 2020-06-10
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6TER
Keywords:
Title:
Crystal structure of a galactokinase from Bifidobacterium infantis in complex with Galactose
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.68 Å
R-Value Free:
0.30
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Galactokinase
Gene (Uniprot):Blon_2062
Chain IDs:A, B, C, D
Chain Length:429
Number of Molecules:4
Biological Source:Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
Primary Citation
Profiling Substrate Promiscuity of Wild-Type Sugar Kinases for Multi-fluorinated Monosaccharides.
Cell Chem Biol 27 1199 ? (2020)
PMID: 32619452 DOI: 10.1016/j.chembiol.2020.06.005

Abstact

Fluorinated sugar-1-phosphates are of emerging importance as intermediates in the chemical and biocatalytic synthesis of modified oligosaccharides, as well as probes for chemical biology. Here we present a systematic study of the activity of a wide range of anomeric sugar kinases (galacto- and N-acetylhexosamine kinases) against a panel of fluorinated monosaccharides, leading to the first examples of polyfluorinated substrates accepted by this class of enzymes. We have discovered four new N-acetylhexosamine kinases with a different substrate scope, thus expanding the number of homologs available in this subclass of kinases. Lastly, we have solved the crystal structure of a galactokinase in complex with 2-deoxy-2-fluorogalactose, giving insight into changes in the active site that may account for the specificity of the enzyme toward certain substrate analogs.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback