6TER image
Entry Detail
PDB ID:
6TER
Keywords:
Title:
Crystal structure of a galactokinase from Bifidobacterium infantis in complex with Galactose
Biological Source:
PDB Version:
Deposition Date:
2019-11-12
Release Date:
2020-06-10
Method Details:
Experimental Method:
Resolution:
1.68 Å
R-Value Free:
0.30
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Galactokinase
Chain IDs:A, B, C, D
Chain Length:429
Number of Molecules:4
Biological Source:Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
Primary Citation
Profiling Substrate Promiscuity of Wild-Type Sugar Kinases for Multi-fluorinated Monosaccharides.
Cell Chem Biol 27 1199 ? (2020)
PMID: 32619452 DOI: 10.1016/j.chembiol.2020.06.005

Abstact

Fluorinated sugar-1-phosphates are of emerging importance as intermediates in the chemical and biocatalytic synthesis of modified oligosaccharides, as well as probes for chemical biology. Here we present a systematic study of the activity of a wide range of anomeric sugar kinases (galacto- and N-acetylhexosamine kinases) against a panel of fluorinated monosaccharides, leading to the first examples of polyfluorinated substrates accepted by this class of enzymes. We have discovered four new N-acetylhexosamine kinases with a different substrate scope, thus expanding the number of homologs available in this subclass of kinases. Lastly, we have solved the crystal structure of a galactokinase in complex with 2-deoxy-2-fluorogalactose, giving insight into changes in the active site that may account for the specificity of the enzyme toward certain substrate analogs.

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