ISDA

Deposition Date 2019-11-08

Release Date 2020-11-18

Last Version Date 2024-01-24

Entry Detail

PDB ID:

6TDB

Keywords:

SIGNALING PROTEIN

Title:

Neuropilin2-b1 domain in a complex with the C-terminal VEGFB167 peptide

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.45 Å

R-Value Free:

0.24

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

C 1 2 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Neuropilin-2
Gene (Uniprot):NRP2
Chain IDs:A, B, C, D
Chain Length:162
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:O60462 Pfam ID:PF00754

Polymer Type:polypeptide(L)
Molecule:C-terminal VEGFB167 peptide
Chain IDs:E (auth: F), F (auth: J), G (auth: K)
Chain Length:5
Number of Molecules:3
Biological Source:Homo sapiens

Ligand Molecules

ACE

EDO

Primary Citation

NRP2-b1 domain in a complex with the C-terminal VEGFB167 peptide

Eldrid, C, Yu, L, Yelland, T, Fotinou, C, Djordjevic, S, Afonine, P.V, Grosse-Kunstleve, R.W, Echols, N, Headd, J.J, Moriarty, N.W, Mustyakimov, M, Terwilliger, T.C, Urzhumtsev, A, Zwart, P.H, Adams, P.D.Show

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Primary Citation of related structures