6TD5 image
Deposition Date 2019-11-07
Release Date 2020-08-26
Last Version Date 2025-04-09
Entry Detail
PDB ID:
6TD5
Keywords:
Title:
Leishmania tarentolae proteasome 20S subunit complexed with LXE408 and bortezomib
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Chain IDs:A, O (auth: a)
Chain Length:250
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Chain IDs:B, P (auth: b)
Chain Length:231
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Chain IDs:C, Q (auth: c)
Chain Length:285
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome endopeptidase complex
Chain IDs:D, R (auth: d)
Chain Length:248
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Chain IDs:E, S (auth: e)
Chain Length:344
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Chain IDs:F, T (auth: f)
Chain Length:428
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome endopeptidase complex
Chain IDs:G, U (auth: g)
Chain Length:238
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Chain IDs:H, V (auth: h)
Chain Length:229
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Chain IDs:I, W (auth: i)
Chain Length:225
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Chain IDs:J, X (auth: j)
Chain Length:205
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit family protein
Chain IDs:K, Y (auth: k)
Chain Length:206
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Chain IDs:L, Z (auth: l)
Chain Length:203
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Chain IDs:M, AA (auth: m)
Chain Length:339
Number of Molecules:2
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Chain IDs:N, BA (auth: n)
Chain Length:220
Number of Molecules:2
Biological Source:Leishmania donovani
Primary Citation

Abstact

Visceral leishmaniasis is responsible for up to 30,000 deaths every year. Current treatments have shortcomings that include toxicity and variable efficacy across endemic regions. Previously, we reported the discovery of GNF6702, a selective inhibitor of the kinetoplastid proteasome, which cleared parasites in murine models of leishmaniasis, Chagas disease, and human African trypanosomiasis. Here, we describe the discovery and characterization of LXE408, a structurally related kinetoplastid-selective proteasome inhibitor currently in Phase 1 human clinical trials. Furthermore, we present high-resolution cryo-EM structures of the Leishmania tarentolae proteasome in complex with LXE408, which provides a compelling explanation for the noncompetitive mode of binding of this novel class of inhibitors of the kinetoplastid proteasome.

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Primary Citation of related structures