6TAD image
Entry Detail
PDB ID:
6TAD
Keywords:
Title:
Bd0314 DslA E143Q mutant
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2019-10-29
Release Date:
2020-07-15
Method Details:
Experimental Method:
Resolution:
1.82 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:SLT domain-containing protein
Chain IDs:A
Chain Length:254
Number of Molecules:1
Biological Source:Bdellovibrio bacteriovorus HD100
Primary Citation
A lysozyme with altered substrate specificity facilitates prey cell exit by the periplasmic predator Bdellovibrio bacteriovorus.
Nat Commun 11 4817 4817 (2020)
PMID: 32968056 DOI: 10.1038/s41467-020-18139-8

Abstact

Lysozymes are among the best-characterized enzymes, acting upon the cell wall substrate peptidoglycan. Here, examining the invasive bacterial periplasmic predator Bdellovibrio bacteriovorus, we report a diversified lysozyme, DslA, which acts, unusually, upon (GlcNAc-) deacetylated peptidoglycan. B. bacteriovorus are known to deacetylate the peptidoglycan of the prey bacterium, generating an important chemical difference between prey and self walls and implying usage of a putative deacetyl-specific "exit enzyme". DslA performs this role, and ΔDslA strains exhibit a delay in leaving from prey. The structure of DslA reveals a modified lysozyme superfamily fold, with several adaptations. Biochemical assays confirm DslA specificity for deacetylated cell wall, and usage of two glutamate residues for catalysis. Exogenous DslA, added ex vivo, is able to prematurely liberate B. bacteriovorus from prey, part-way through the predatory lifecycle. We define a mechanism for specificity that invokes steric selection, and use the resultant motif to identify wider DslA homologues.

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