6T9R image
Entry Detail
PDB ID:
6T9R
Keywords:
Title:
Aplysia californica AChBP in complex with a cytisine derivative
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-10-28
Release Date:
2020-02-12
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.19
R-Value Work:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Acetylcholine binding protein
Chain IDs:A (auth: AAA), B (auth: BBB), C (auth: CCC), D (auth: DDD), E (auth: EEE), F (auth: FFF), G (auth: GGG), H (auth: HHH), I (auth: III), J (auth: JJJ)
Chain Length:249
Number of Molecules:10
Biological Source:Aplysia californica
Primary Citation
The thermodynamic profile and molecular interactions of a C(9)-cytisine derivative-binding acetylcholine-binding protein from Aplysia californica.
Acta Crystallogr.,Sect.F 76 74 80 (2020)
PMID: 32039888 DOI: 10.1107/S2053230X20001168

Abstact

Cytisine, a natural product with high affinity for clinically relevant nicotinic acetylcholine receptors (nAChRs), is used as a smoking-cessation agent. The compound displays an excellent clinical profile and hence there is an interest in derivatives that may be further improved or find use in the treatment of other conditions. Here, the binding of a cytisine derivative modified by the addition of a 3-(hydroxypropyl) moiety (ligand 4) to Aplysia californica acetylcholine-binding protein (AcAChBP), a surrogate for nAChR orthosteric binding sites, was investigated. Isothermal titration calorimetry revealed that the favorable binding of cytisine and its derivative to AcAChBP is driven by the enthalpic contribution, which dominates an unfavorable entropic component. Although ligand 4 had a less unfavorable entropic contribution compared with cytisine, the affinity for AcAChBP was significantly diminished owing to the magnitude of the reduction in the enthalpic component. The high-resolution crystal structure of the AcAChBP-4 complex indicated close similarities in the protein-ligand interactions involving the parts of 4 common to cytisine. The point of difference, the 3-(hydroxypropyl) substituent, appears to influence the conformation of the Met133 side chain and helps to form an ordered solvent structure at the edge of the orthosteric binding site.

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