6T9D image
Entry Detail
PDB ID:
6T9D
Keywords:
Title:
Crystal structure of a bispecific DutaFab in complex with human VEGF121
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-10-28
Release Date:
2020-12-16
Method Details:
Experimental Method:
Resolution:
2.91 Å
R-Value Free:
0.28
R-Value Work:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:VP mat DutaFab VH chain
Chain IDs:A (auth: AAA), E (auth: HHH)
Chain Length:220
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:VP mat DutaFab VL chain
Chain IDs:B (auth: BBB), F (auth: LLL)
Chain Length:213
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Vascular endothelial growth factor A
Chain IDs:C (auth: CCC), D (auth: DDD)
Chain Length:121
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
DutaFabs are engineered therapeutic Fab fragments that can bind two targets simultaneously.
Nat Commun 12 708 708 (2021)
PMID: 33514724 DOI: 10.1038/s41467-021-20949-3

Abstact

We report the development of a platform of dual targeting Fab (DutaFab) molecules, which comprise two spatially separated and independent binding sites within the human antibody CDR loops: the so-called H-side paratope encompassing HCDR1, HCDR3 and LCDR2, and the L-side paratope encompassing LCDR1, LCDR3 and HCDR2. Both paratopes can be independently selected and combined into the desired bispecific DutaFabs in a modular manner. X-ray crystal structures illustrate that DutaFabs are able to bind two target molecules simultaneously at the same Fv region comprising a VH-VL heterodimer. In the present study, this platform is applied to generate DutaFabs specific for VEGFA and PDGF-BB, which show high affinities, physico-chemical stability and solubility, as well as superior efficacy over anti-VEGF monotherapy in vivo. These molecules exemplify the usefulness of DutaFabs as a distinct class of antibody therapeutics, which is currently being evaluated in patients.

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