6T85 image
Entry Detail
PDB ID:
6T85
Keywords:
Title:
Urocanate reductase in complex with ADP
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2019-10-24
Release Date:
2021-03-03
Method Details:
Experimental Method:
Resolution:
1.10 Å
R-Value Free:
0.12
R-Value Work:
0.10
R-Value Observed:
0.10
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Urocanate reductase
Chain IDs:A
Chain Length:460
Number of Molecules:1
Biological Source:Shewanella oneidensis (strain MR-1)
Primary Citation
Structural characterization of the microbial enzyme urocanate reductase mediating imidazole propionate production.
Nat Commun 12 1347 1347 (2021)
PMID: 33649331 DOI: 10.1038/s41467-021-21548-y

Abstact

The human microbiome can produce metabolites that modulate insulin signaling. Type 2 diabetes patients have increased circulating concentrations of the microbially produced histidine metabolite, imidazole propionate (ImP) and administration of ImP in mice resulted in impaired glucose tolerance. Interestingly, the fecal microbiota of the patients had increased capacity to produce ImP, which is mediated by the bacterial enzyme urocanate reductase (UrdA). Here, we describe the X-ray structures of the ligand-binding domains of UrdA in four different states, representing the structural transitions along the catalytic reaction pathway of this unexplored enzyme linked to disease in humans. The structures in combination with functional data provide key insights into the mechanism of action of UrdA that open new possibilities for drug development strategies targeting type 2 diabetes.

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Primary Citation of related structures