6T7O image
Deposition Date 2019-10-22
Release Date 2019-12-11
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6T7O
Title:
X-ray structure of the C-terminal domain of S. aureus Hibernating Promoting Factor (CTD-SaHPF)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribosome hibernation promotion factor
Gene (Uniprot):hpf
Chain IDs:A, B
Chain Length:67
Number of Molecules:2
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Primary Citation
Dimerization of long hibernation promoting factor from Staphylococcus aureus: Structural analysis and biochemical characterization.
J.Struct.Biol. 209 107408 107408 (2020)
PMID: 31669310 DOI: 10.1016/j.jsb.2019.107408

Abstact

Staphylococcus aureus hibernation promoting factor (SaHPF) is responsible for the formation of 100S ribosome dimers, which in turn help this pathogen to reduce energy spent under unfavorable conditions. Ribosome dimer formation strongly depends on the dimerization of the C-terminal domain of SaHPF (CTDSaHPF). In this study, we solved the crystal structure of CTDSaHPF at 1.6 Å resolution and obtained a precise arrangement of the dimer interface. Residues Phe160, Val162, Thr171, Ile173, Tyr175, Ile185 andThr187 in the dimer interface of SaHPF protein were mutated and the effects were analyzed for the formation of 100S disomes of ribosomes isolated from S. aureus. It was shown that substitution of any of single residues Phe160, Val162, Ile173, Tyr175 and Ile185 in the SaHPF homodimer interface abolished the ribosome dimerization in vitro.

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